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EasyModeller: A graphical interface to MODELLER.

ABSTRACT: BACKGROUND: MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently. FINDINGS: The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Perl/Tk, which can be used as a standalone tool in windows platform with MODELLER and Python preinstalled. It helps inexperienced users to perform modeling, assessment, visualization, and optimization of protein models in a simple and straightforward way. CONCLUSION: EasyModeller provides a graphical straight forward interface and functions as a stand-alone tool which can be used in a standard personal computer with Microsoft Windows as the operating system.

SUBMITTER: Kuntal BK

PROVIDER: S-EPMC2936912 | biostudies-literature | 2010

REPOSITORIES: biostudies-literature

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EasyModeller: A graphical interface to MODELLER.

Kuntal Bhusan K BK Aparoy Polamarasetty P Reddanna Pallu P

BMC research notes 20100816

<h4>Background</h4>MODELLER is a program for automated protein Homology Modeling. It is one of the most widely used tool for homology or comparative modeling of protein three-dimensional structures, but most users find it a bit difficult to start with MODELLER as it is command line based and requires knowledge of basic Python scripting to use it efficiently.<h4>Findings</h4>The study was designed with an aim to develop of "EasyModeller" tool as a frontend graphical interface to MODELLER using Pe ...[more]

PMID: 20712861

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