Dataset Information

Survival and Diversity of Human Homologous Dietary MicroRNAs in Conventionally Cooked Top Sirloin and Dried Bovine Tissue Extracts.

ABSTRACT: Dietary microRNAs (miRNAs), notably those found in milk, are currently being investigated for their potential to elicit biological effects via canonical binding to human messenger RNA targets once ingested. Besides milk, beef and other bovine tissue-derived ingredients could also be a relevant source of potentially bioactive dietary miRNAs. In this study, we characterized the human homologous miRNA profiles in food-grade, bovine-sourced sirloin, heart and adrenal tissue (raw, cooked, and pasteurized, freeze-dried extracts) via deep-sequencing and quantitative reverse transcription PCR (RT-qPCR). A total of 198 human homologous miRNAs were detected at 10 or more normalized reads in all replicates (n = 3) of at least one preparation method. Tissue origin rather than preparation method was the major differentiating factor of miRNA profiles, and adrenal-based miRNA profiles were the most distinct. The ten most prevalent miRNAs in each tissue represented 71-93% of the total normalized counts for all annotated miRNAs. In cooked sirloin, the most abundant miRNAs were miR-10b-5p, (48.8% of total annotated miRNA reads) along with the muscle-specific miR-1 (24.1%) and miR-206 (4.8%). In dried heart extracts, miR-1 (17.0%), miR-100-5p (16.1%) and miR-99a-5p (11.0%) gave the highest normalized read counts. In dried adrenal extracts, miR-10b-5p (71.2%) was the most prominent followed by miR-143-3p (7.1%) and 146b-5p (3.7%). Sequencing results for five detected and two undetected miRNAs were successfully validated by RT-qPCR. We conclude that edible, bovine tissues contain unique profiles of human homologous dietary miRNAs that survive heat-based preparation methods.

SUBMITTER: Dever JT

PROVIDER: S-EPMC4578893 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Publications

Survival and Diversity of Human Homologous Dietary MicroRNAs in Conventionally Cooked Top Sirloin and Dried Bovine Tissue Extracts.

Dever Joseph T JT Kemp Michael Q MQ Thompson Amber L AL Keller Hana G K HG Waksmonski James C JC Scholl Chris D CD Barnes David M DM

PloS one 20150922 9

Dietary microRNAs (miRNAs), notably those found in milk, are currently being investigated for their potential to elicit biological effects via canonical binding to human messenger RNA targets once ingested. Besides milk, beef and other bovine tissue-derived ingredients could also be a relevant source of potentially bioactive dietary miRNAs. In this study, we characterized the human homologous miRNA profiles in food-grade, bovine-sourced sirloin, heart and adrenal tissue (raw, cooked, and pasteur ...[more]

PMID: 26394052

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Project description:Agricultural intensification has led to drastic population declines in Europe's arable plant vegetation, and continuous monitoring is a prerequisite for assessing measures to increase and conserve remnant populations of endangered arable plant species. Unfortunately, strong variation in plot sizes and in-field locations makes comparison of current arable plant monitoring approaches difficult. This study compares different relevé approaches in conventionally managed arable fields in Northwest German farmland with respect to plant species detection success and time expenditure. We compared species detection rate and expenditure of time of six different relevé types in 45 conventionally managed arable fields (each 15 fields of wheat, maize, and rapeseed): field "Interior" plots (50 × 2 m); field edge plots: "Edge_30" (30 × 2 m), "Edge_50" (50 × 2 m), and "Edge_500" (500 × 1 m); "Subplots" (four dispersed plots of 5 × 1 m); and "Corner" plots (50 × 2 m). To determine species detection rate, the species richness recorded with a survey method was related to the field's total plant species number as estimated from a survey of the entire field edge zone. With a species detection rate of 8.3% (median), interior plots were inadequate for characterizing the field's arable plant vegetation. Edge_500 plots yielded the highest proportion of the field's arable plant species pool (75.6%, including taxa of conservation value), followed by "Corner" plots (45.8%) and "Sublots" (32.6%). Edge_50 and Edge_30 plots detected less than 25% of the field's species pool. The average time needed for a relevé was 20 min in Edge500 plots and 5-11 min in the other plot types. We suggest implementing Edge_500 plots as a standard monitoring approach in conventionally managed farmland due to its favorable ratio of detection success to expenditure of time. Our findings should be compared to methodological studies conducted in other regions, in different farmland management systems, and in landscapes of variable complexities.

Dataset Information

Survival and Diversity of Human Homologous Dietary MicroRNAs in Conventionally Cooked Top Sirloin and Dried Bovine Tissue Extracts.

Publications

Survival and Diversity of Human Homologous Dietary MicroRNAs in Conventionally Cooked Top Sirloin and Dried Bovine Tissue Extracts.

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