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Genome-wide Association Study Identifies Loci for the Polled Phenotype in Yak.

ABSTRACT: The absence of horns, known as the polled phenotype, is an economically important trait in modern yak husbandry, but the genomic structure and genetic basis of this phenotype have yet to be discovered. Here, we conducted a genome-wide association study with a panel of 10 horned and 10 polled yaks using whole genome sequencing. We mapped the POLLED locus to a 200-kb interval, which comprises three protein-coding genes. Further characterization of the candidate region showed recent artificial selection signals resulting from the breeding process. We suggest that expressional variations rather than structural variations in protein probably contribute to the polled phenotype. Our results not only represent the first and important step in establishing the genomic structure of the polled region in yak, but also add to our understanding of the polled trait in bovid species.

SUBMITTER: Liang C

PROVIDER: S-EPMC4936749 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

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Genome-wide Association Study Identifies Loci for the Polled Phenotype in Yak.

Liang Chunnian C Wang Lizhong L Wu Xiaoyun X Wang Kun K Ding Xuezhi X Wang Mingcheng M Chu Min M Xie Xiuyue X Qiu Qiang Q Yan Ping P

PloS one 20160707 7

The absence of horns, known as the polled phenotype, is an economically important trait in modern yak husbandry, but the genomic structure and genetic basis of this phenotype have yet to be discovered. Here, we conducted a genome-wide association study with a panel of 10 horned and 10 polled yaks using whole genome sequencing. We mapped the POLLED locus to a 200-kb interval, which comprises three protein-coding genes. Further characterization of the candidate region showed recent artificial sele ...[more]

PMID: 27389700

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