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Simulated single molecule microscopy with SMeagol.

ABSTRACT:

Unlabelled

SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data.

Availability and implementation

SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction-diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net

Contact

johan.elf@icm.uu.se

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Linden M

PROVIDER: S-EPMC4965627 | biostudies-literature | 2016 Aug

REPOSITORIES: biostudies-literature

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Publications

Simulated single molecule microscopy with SMeagol.

Lindén Martin M Ćurić Vladimir V Boucharin Alexis A Fange David D Elf Johan J

Bioinformatics (Oxford, England) 20160304 15

<h4>Unlabelled</h4>SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data.<h4>Availability and implementation</h4>SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction-diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can ...[more]

PMID: 27153711

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