Unknown

Dataset Information

0

Microsatellite markers for Nuphar japonica (Nymphaeaceae), an aquatic plant in the agricultural ecosystem of Japan.

ABSTRACT: PREMISE OF THE STUDY:Nuphar species (Nymphaeaceae) are representative aquatic plants in irrigation ponds in Japanese agricultural ecosystems. We developed 15 polymorphic microsatellite markers for N. japonica and confirmed their utility for its close relatives N. oguraensis var. akiensis and N. ×saijoensis, which originated from natural hybridization between N. japonica and N. oguraensis. METHODS AND RESULTS:Genetic variation was characterized in 15 polymorphic loci in three populations of N. japonica. The average number of alleles per locus was 3.47 (range = 2-9; n = 32), and the average expected heterozygosity per locus was 0.84 (range = 0.5-1.0); 11 loci were amplified in N. oguraensis var. akiensis and 15 in N. ×saijoensis. CONCLUSIONS:The polymorphic microsatellite markers developed in this study will be useful for investigating the levels of genetic diversity within remnant populations of Nuphar taxa and could provide a valuable tool for conservation genetics of these taxa.

SUBMITTER: Kondo T 

PROVIDER: S-EPMC5238700 | biostudies-literature | 2016 Dec

REPOSITORIES: biostudies-literature

Json Xml
altmetric image

Publications

Microsatellite markers for <i>Nuphar japonica</i> (Nymphaeaceae), an aquatic plant in the agricultural ecosystem of Japan.

Kondo Toshiaki T   Watanabe Sonoko S   Shiga Takashi T   Isagi Yuji Y  

Applications in plant sciences 20161208 12

<h4>Premise of the study</h4><i>Nuphar</i> species (Nymphaeaceae) are representative aquatic plants in irrigation ponds in Japanese agricultural ecosystems. We developed 15 polymorphic microsatellite markers for <i>N. japonica</i> and confirmed their utility for its close relatives <i>N. oguraensis</i> var. <i>akiensis</i> and <i>N</i>. ×<i>saijoensis</i>, which originated from natural hybridization between <i>N. japonica</i> and <i>N. oguraensis</i>.<h4>Methods and results</h4>Genetic variation  ...[more]

Similar Datasets

Unknown Characterization of 39 microsatellite markers from <i>Nuphar shimadai</i> (Nymphaeaceae) and cross-amplification in two related taxa.
| S-EPMC6201724 | biostudies-literature
Unknown Development of 18 microsatellite markers for <i>Atractylodes japonica</i>.
| S-EPMC7249270 | biostudies-literature
Unknown Development of microsatellite markers for Vitex rotundifolia (Verbenaceae), an endangered coastal plant in Lake Biwa, Japan.
| S-EPMC4103139 | biostudies-literature
Unknown Development of microsatellite markers in the hexaploid aquatic macrophyte, Myriophyllum spicatum (Haloragaceae).
| S-EPMC4105368 | biostudies-literature
Unknown Multiple paternity assessed in the cuttlefish Sepiella japonica (Mollusca, Cephalopoda) using microsatellite markers.
| S-EPMC6803358 | biostudies-literature
Unknown Development of 16 microsatellite markers for Prince's Pine, Chimaphila japonica (Pyroleae, Monotropoideae, Ericaceae).
| S-EPMC3344197 | biostudies-literature
Unknown Development of EST-derived microsatellite markers in the aquatic macrophyte Ranunculus bungei (Ranunculaceae).
| S-EPMC5546165 | biostudies-literature
Unknown Complexity of indica-japonica varietal differentiation in Bangladesh rice landraces revealed by microsatellite markers.
| S-EPMC3688385 | biostudies-literature
Unknown Development of microsatellite markers for the clonal shrub Orixa japonica (Rutaceae) using 454 sequencing.
| S-EPMC5077282 | biostudies-literature
Unknown Identification of plant beneficial <i>Bacillus</i> spp. for Resilient agricultural ecosystem.
| S-EPMC8610352 | biostudies-literature