Ontology highlight
ABSTRACT: Background
Genome-wide single marker and gene-based meta-analyses of long-term average (LTA) blood pressure (BP) phenotypes may reveal novel findings for BP.Methods and results
We conducted genome-wide analysis among 18 422 East Asian participants (stage 1) followed by replication study of ≤46 629 participants of European ancestry (stage 2). Significant single-nucleotide polymorphisms and genes were determined by a P<5.0×10-8 and 2.5×10-6, respectively, in joint analyses of stage-1 and stage-2 data. We identified 1 novel ARL3 variant, rs4919669 at 10q24.32, influencing LTA systolic BP (stage-1 P=5.03×10-8, stage-2 P=8.64×10-3, joint P=2.63×10-8) and mean arterial pressure (stage-1 P=3.59×10-9, stage-2 P=2.35×10-2, joint P=2.64×10-8). Three previously reported BP loci (WBP1L, NT5C2, and ATP2B1) were also identified for all BP phenotypes. Gene-based analysis provided the first robust evidence for association of KCNJ11 with LTA systolic BP (stage-1 P=8.55×10-6, stage-2 P=1.62×10-5, joint P=3.28×10-9) and mean arterial pressure (stage-1 P=9.19×10-7, stage-2 P=9.69×10-5, joint P=2.15×10-9) phenotypes. Fourteen genes (TMEM180, ACTR1A, SUFU, ARL3, SFXN2, WBP1L, CYP17A1, C10orf32, C10orf32-ASMT, AS3MT, CNNM2, and NT5C2 at 10q24.32; ATP2B1 at 12q21.33; and NCR3LG1 at 11p15.1) implicated by previous genome-wide association study meta-analyses were also identified. Among the loci identified by the previous genome-wide association study meta-analysis of LTA BP, we transethnically replicated associations of the KCNK3 marker rs1275988 at 2p23.3 with LTA systolic BP and mean arterial pressure phenotypes (P=1.27×10-4 and 3.30×10-4, respectively).Conclusions
We identified 1 novel variant and 1 novel gene and present the first direct evidence of relevance of the KCNK3 locus for LTA BP among East Asians.
SUBMITTER: Li C
PROVIDER: S-EPMC5704911 | biostudies-literature | 2017 Apr
REPOSITORIES: biostudies-literature
Li Changwei C Kim Yun Kyoung YK Dorajoo Rajkumar R Li Huaixing H Lee I-Te IT Cheng Ching-Yu CY He Meian M Sheu Wayne H-H WH Guo Xiuqing X Ganesh Santhi K SK He Jiang J Lee Juyoung J Liu Jianjun J Hu Yao Y Rao Dabeeru C DC Tsai Fuu-Jen FJ Koh Jia Yu JY Hu Hua H Liang Kae-Woei KW Palmas Walter W Hixson James E JE Han Sohee S Teo Yik-Ying YY Wang Yiqin Y Chen Jing J Lu Chieh Hsiang CH Zheng Yingfeng Y Gui Lixuan L Lee Wen-Jane WJ Yao Jie J Gu Dongfeng D Han Bok-Ghee BG Sim Xueling X Sun Liang L Zhao Jinying J Chen Chien-Hsiun CH Kumari Neelam N He Yunfeng Y Taylor Kent D KD Raffel Leslie J LJ Moon Sanghoon S Rotter Jerome I JI Ida Chen Yii-der YD Wu Tangchun T Wong Tien Yin TY Wu Jer-Yuarn JY Lin Xu X Tai E-Shyong ES Kim Bong-Jo BJ Kelly Tanika N TN
Circulation. Cardiovascular genetics 20170401 2
<h4>Background</h4>Genome-wide single marker and gene-based meta-analyses of long-term average (LTA) blood pressure (BP) phenotypes may reveal novel findings for BP.<h4>Methods and results</h4>We conducted genome-wide analysis among 18 422 East Asian participants (stage 1) followed by replication study of ≤46 629 participants of European ancestry (stage 2). Significant single-nucleotide polymorphisms and genes were determined by a <i>P</i><5.0×10<sup>-8</sup> and 2.5×10<sup>-</sup><sup>6</sup>, ...[more]