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Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.


ABSTRACT: BACKGROUND:Genome-wide single marker and gene-based meta-analyses of long-term average (LTA) blood pressure (BP) phenotypes may reveal novel findings for BP. METHODS AND RESULTS:We conducted genome-wide analysis among 18 422 East Asian participants (stage 1) followed by replication study of ?46 629 participants of European ancestry (stage 2). Significant single-nucleotide polymorphisms and genes were determined by a P<5.0×10-8 and 2.5×10-6, respectively, in joint analyses of stage-1 and stage-2 data. We identified 1 novel ARL3 variant, rs4919669 at 10q24.32, influencing LTA systolic BP (stage-1 P=5.03×10-8, stage-2 P=8.64×10-3, joint P=2.63×10-8) and mean arterial pressure (stage-1 P=3.59×10-9, stage-2 P=2.35×10-2, joint P=2.64×10-8). Three previously reported BP loci (WBP1L, NT5C2, and ATP2B1) were also identified for all BP phenotypes. Gene-based analysis provided the first robust evidence for association of KCNJ11 with LTA systolic BP (stage-1 P=8.55×10-6, stage-2 P=1.62×10-5, joint P=3.28×10-9) and mean arterial pressure (stage-1 P=9.19×10-7, stage-2 P=9.69×10-5, joint P=2.15×10-9) phenotypes. Fourteen genes (TMEM180, ACTR1A, SUFU, ARL3, SFXN2, WBP1L, CYP17A1, C10orf32, C10orf32-ASMT, AS3MT, CNNM2, and NT5C2 at 10q24.32; ATP2B1 at 12q21.33; and NCR3LG1 at 11p15.1) implicated by previous genome-wide association study meta-analyses were also identified. Among the loci identified by the previous genome-wide association study meta-analysis of LTA BP, we transethnically replicated associations of the KCNK3 marker rs1275988 at 2p23.3 with LTA systolic BP and mean arterial pressure phenotypes (P=1.27×10-4 and 3.30×10-4, respectively). CONCLUSIONS:We identified 1 novel variant and 1 novel gene and present the first direct evidence of relevance of the KCNK3 locus for LTA BP among East Asians.

SUBMITTER: Li C 

PROVIDER: S-EPMC5704911 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature

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Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.

Li Changwei C   Kim Yun Kyoung YK   Dorajoo Rajkumar R   Li Huaixing H   Lee I-Te IT   Cheng Ching-Yu CY   He Meian M   Sheu Wayne H-H WH   Guo Xiuqing X   Ganesh Santhi K SK   He Jiang J   Lee Juyoung J   Liu Jianjun J   Hu Yao Y   Rao Dabeeru C DC   Tsai Fuu-Jen FJ   Koh Jia Yu JY   Hu Hua H   Liang Kae-Woei KW   Palmas Walter W   Hixson James E JE   Han Sohee S   Teo Yik-Ying YY   Wang Yiqin Y   Chen Jing J   Lu Chieh Hsiang CH   Zheng Yingfeng Y   Gui Lixuan L   Lee Wen-Jane WJ   Yao Jie J   Gu Dongfeng D   Han Bok-Ghee BG   Sim Xueling X   Sun Liang L   Zhao Jinying J   Chen Chien-Hsiun CH   Kumari Neelam N   He Yunfeng Y   Taylor Kent D KD   Raffel Leslie J LJ   Moon Sanghoon S   Rotter Jerome I JI   Ida Chen Yii-der YD   Wu Tangchun T   Wong Tien Yin TY   Wu Jer-Yuarn JY   Lin Xu X   Tai E-Shyong ES   Kim Bong-Jo BJ   Kelly Tanika N TN  

Circulation. Cardiovascular genetics 20170401 2


<h4>Background</h4>Genome-wide single marker and gene-based meta-analyses of long-term average (LTA) blood pressure (BP) phenotypes may reveal novel findings for BP.<h4>Methods and results</h4>We conducted genome-wide analysis among 18 422 East Asian participants (stage 1) followed by replication study of ≤46 629 participants of European ancestry (stage 2). Significant single-nucleotide polymorphisms and genes were determined by a <i>P</i><5.0×10<sup>-8</sup> and 2.5×10<sup>-</sup><sup>6</sup>,  ...[more]

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