Dataset Information

Ensembl 2019.

ABSTRACT: The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining and updating reference genome annotation and comparative genomics resources. This year we describe our new and expanded gene, variant and comparative annotation capabilities, which led to a 50% increase in the number of vertebrate genomes we support. We have also doubled the number of available human variants and added regulatory regions for many mouse cell types and developmental stages. Our data sets and tools are available via the Ensembl website as well as a through a RESTful webservice, Perl application programming interface and as data files for download.

SUBMITTER: Cunningham F

PROVIDER: S-EPMC6323964 | biostudies-literature | 2019 Jan

REPOSITORIES: biostudies-literature

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Publications

Ensembl 2019.

Cunningham Fiona F Achuthan Premanand P Akanni Wasiu W Allen James J Amode M Ridwan MR Armean Irina M IM Bennett Ruth R Bhai Jyothish J Billis Konstantinos K Boddu Sanjay S Cummins Carla C Davidson Claire C Dodiya Kamalkumar Jayantilal KJ Gall Astrid A Girón Carlos García CG Gil Laurent L Grego Tiago T Haggerty Leanne L Haskell Erin E Hourlier Thibaut T Izuogu Osagie G OG Janacek Sophie H SH Juettemann Thomas T Kay Mike M Laird Matthew R MR Lavidas Ilias I Liu Zhicheng Z Loveland Jane E JE Marugán José C JC Maurel Thomas T McMahon Aoife C AC Moore Benjamin B Morales Joannella J Mudge Jonathan M JM Nuhn Michael M Ogeh Denye D Parker Anne A Parton Andrew A Patricio Mateus M Abdul Salam Ahamed Imran AI Schmitt Bianca M BM Schuilenburg Helen H Sheppard Dan D Sparrow Helen H Stapleton Eloise E Szuba Marek M Taylor Kieron K Threadgold Glen G Thormann Anja A Vullo Alessandro A Walts Brandon B Winterbottom Andrea A Zadissa Amonida A Chakiachvili Marc M Frankish Adam A Hunt Sarah E SE Kostadima Myrto M Langridge Nick N Martin Fergal J FJ Muffato Matthieu M Perry Emily E Ruffier Magali M Staines Daniel M DM Trevanion Stephen J SJ Aken Bronwen L BL Yates Andrew D AD Zerbino Daniel R DR Flicek Paul P

Nucleic acids research 20190101 D1

The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining and updating reference genome annotation and comparative genomics resources. This year we describe our new and expanded gene, variant and comparative annotation capabilities, which led to a 50% increase in the number of vertebrate genomes we support. We have also ...[more]

PMID: 30407521

Dataset Information

Ensembl 2019.

Publications

Ensembl 2019.

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