Dataset Information

CRISPR-Cas13d mediates robust RNA virus interference in plants.

ABSTRACT:

Background

CRISPR-Cas systems endow bacterial and archaeal species with adaptive immunity mechanisms to fend off invading phages and foreign genetic elements. CRISPR-Cas9 has been harnessed to confer virus interference against DNA viruses in eukaryotes, including plants. In addition, CRISPR-Cas13 systems have been used to target RNA viruses and the transcriptome in mammalian and plant cells. Recently, CRISPR-Cas13a has been shown to confer modest interference against RNA viruses. Here, we characterized a set of different Cas13 variants to identify those with the most efficient, robust, and specific interference activities against RNA viruses in planta using Nicotiana benthamiana.

Results

Our data show that LwaCas13a, PspCas13b, and CasRx variants mediate high interference activities against RNA viruses in transient assays. Moreover, CasRx mediated robust interference in both transient and stable overexpression assays when compared to the other variants tested. CasRx targets either one virus alone or two RNA viruses simultaneously, with robust interference efficiencies. In addition, CasRx exhibits strong specificity against the target virus and does not exhibit collateral activity in planta.

Conclusions

Our data establish CasRx as the most robust Cas13 variant for RNA virus interference applications in planta and demonstrate its suitability for studying key questions relating to virus biology.

SUBMITTER: Mahas A

PROVIDER: S-EPMC6886189 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Publications

CRISPR-Cas13d mediates robust RNA virus interference in plants.

Mahas Ahmed A Aman Rashid R Mahfouz Magdy M

Genome biology 20191202 1

<h4>Background</h4>CRISPR-Cas systems endow bacterial and archaeal species with adaptive immunity mechanisms to fend off invading phages and foreign genetic elements. CRISPR-Cas9 has been harnessed to confer virus interference against DNA viruses in eukaryotes, including plants. In addition, CRISPR-Cas13 systems have been used to target RNA viruses and the transcriptome in mammalian and plant cells. Recently, CRISPR-Cas13a has been shown to confer modest interference against RNA viruses. Here, w ...[more]

PMID: 31791381

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Dataset Information

CRISPR-Cas13d mediates robust RNA virus interference in plants.

Background

Results

Conclusions

Publications

CRISPR-Cas13d mediates robust RNA virus interference in plants.

Similar Datasets

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