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Linked optical and gene expression profiling of single cells at high-throughput.

ABSTRACT: Single-cell RNA sequencing has emerged as a powerful tool for characterizing cells, but not all phenotypes of interest can be observed through changes in gene expression. Linking sequencing with optical analysis has provided insight into the molecular basis of cellular function, but current approaches have limited throughput. Here, we present a high-throughput platform for linked optical and gene expression profiling of single cells. We demonstrate accurate fluorescence and gene expression measurements on thousands of cells in a single experiment. We use the platform to characterize DNA and RNA changes through the cell cycle and correlate antibody fluorescence with gene expression. The platform's ability to isolate rare cell subsets and perform multiple measurements, including fluorescence and sequencing-based analysis, holds potential for scalable multi-modal single-cell analysis.

SUBMITTER: Zhang JQ

PROVIDER: S-EPMC7041248 | biostudies-literature | 2020 Feb

REPOSITORIES: biostudies-literature

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Linked optical and gene expression profiling of single cells at high-throughput.

Zhang Jesse Q JQ Siltanen Christian A CA Liu Leqian L Chang Kai-Chun KC Gartner Zev J ZJ Abate Adam R AR

Genome biology 20200224 1

Single-cell RNA sequencing has emerged as a powerful tool for characterizing cells, but not all phenotypes of interest can be observed through changes in gene expression. Linking sequencing with optical analysis has provided insight into the molecular basis of cellular function, but current approaches have limited throughput. Here, we present a high-throughput platform for linked optical and gene expression profiling of single cells. We demonstrate accurate fluorescence and gene expression measu ...[more]

PMID: 32093753

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Linked optical and gene expression profiling of single cells at high throughput

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