Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Citrus unshiu

PROVIDER: GSE202927 | GEO | 2022/07/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

Project description:The changes of golbal DNA methylation level are relative to phenotypes transition of plant, expecially during producetive growth program. Therefore, we detect the grolbal DNA methlation and transcription level of stems after LD treated and CK group to compare the DNA methylomes difference between CK and LD group. The increase in DNA methylation level of LD group was correlated with decreased expression of DNA demethylase genes.There was a strong negative correlation between the genes expression level and methylation level of the flowering induction/flower development genes.

2022-07-26 | GSE202926 | GEO

Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

Project description:To investigate the cooperation of light drought with flower branches building and flower bud formation in Citrus, we set two groups including 75 days light drought (LD) and CK to uncover which target genes relatived to flower bud and branches building have been influenced by LD. We then performed gene expression profiling analysis using data obtained from RNA-seq of two different treatment.

2022-07-26 | GSE202925 | GEO

Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

Project description:Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [Bisulfite-Seq]

| PRJNA837761 | ENA

Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

Project description:Transcriptome and Methylome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition

| PRJNA837759 | ENA

Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

Project description:Transcriptome analysis of flowering branches building of Citrus plants induced by light drought (LD) condition [RNA-seq]

| PRJNA837762 | ENA

Building chromosome-wide LD maps.

Project description:SummaryBMapBuilder builds maps of pairwise linkage disequilibrium (LD) in either two or three dimensions. The optimized resolution allows for graphical display of LD for single nucleotide polymorphisms (SNPs) in a whole chromosome.AvailabilityThe program is coded in Java, which runs on all relevant operating systems, including Windows, Mac and Unix/Linux, and is available from http://bios.ugr.es/BMapBuilder.

| S-EPMC2893229 | biostudies-literature

Flowering plants

Project description:Methods for Quick DNA Barcode Reference Library Construction

| PRJNA608619 | ENA

Tanzanian flowering plants

Project description:Impact of land use intensification and local features on plants and pollinators in Sub-Saharan smallholder farms

| PRJEB46025 | ENA

Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef-building corals

Project description:Acclimatization through phenotypic plasticity represents a more rapid response to environmental change than adaptation and is vital to optimize organisms’ performance in different conditions. Generally, animals are less phenotypically plastic than plants, but reef-building corals exhibit plant-like properties. They are light-dependent with a sessile and moddular construction that facilitates rapid morphological changes within their lifetime. We induced phenotypic changes by altering light exposure in a reciprocal transplant experiment and found that coral plasticity is a colony trait emerging from comprehensive morphological and physiological changes within the colony. Plasticity in skeletal features optimized coral light harvesting and utilization and paralleled with significant methylome and transcriptome modifications. Network-associated responses resulted in the identification of hub genes and clusters associated to the change in phenotype: inter-partner recognition and phagocytosis, soft tissue growth and biomineralization. Furthermore, we identified hub genes putatively involved in animal photoreception-phototransduction. These findings fundamentally advance our understanding of how reef-building corals repattern the methylome and adjust a phenotype, revealing an important role of light sensing by the coral animal to optimize photosynthetic performance of the symbionts. This SuperSeries is composed of the SubSeries listed below.

2024-01-01 | GSE245494 | GEO

Activation of Secondary Metabolism in Citrus Plants Is Associated to Sensitivity to Combined Drought and High Temperatures.

Project description:Drought and heat stresses are two of the most frequent environmental factors that take place simultaneously in the field constraining global crop productivity. Metabolism reconfiguration is often behind the adaptation of plants to adverse environmental conditions. Carrizo citrange and Cleopatra mandarin, two citrus genotypes with contrasting ability to tolerate combined heat and drought conditions, showed different metabolite patterns. Increased levels of phenylpropanoid metabolites were observed in Cleopatra in response to stress, including scopolin, a metabolite involved in defense mechanisms. Tolerant Carrizo accumulated sinapic acid and sinapoyl aldehyde, direct precursors of lignins. Finally, Cleopatra showed an accumulation of flavonols and glycosylated and polymethoxylated flavones such as tangeritin. The activation of flavonoid biosynthesis in Cleopatra could be aimed to mitigate the higher oxidative damage observed in this genotype. In general, limonoids were more severely altered in Cleopatra than in Carrizo in response to stress imposition. To conclude, all metabolite changes observed in Cleopatra suggest the activation of energy metabolism along with metabolic pathways leading to the accumulation of photoprotective and antioxidant secondary metabolites, oriented to mitigate the damaging effects of stress. Conversely, the higher ability of Carrizo to retain a high photosynthetic activity and to cope with oxidative stress allowed the maintenance of the metabolic activity and prevented the accumulation of antioxidant metabolites.

| S-EPMC5220112 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data