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MicroRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

ABSTRACT: In this study, a high-throughput sequencing strategy was employed to identify the miRNAs involved in P. olivaceus albinism. High-throughput miRNA sequencing identified a total of 475 miRNAs, including 64 novel miRNAs. Furthermore, 33 differentially expressed miRNAs containing 13 up-regulated and 20 down-regulated miRNAs were identified in albino versus normally pigmented individuals (fold change ≥1.5 or ≤0.67 and p≤0.05).

ORGANISM(S): Paralichthys olivaceus

PROVIDER: GSE99342 | GEO | 2017/07/13

SECONDARY ACCESSION(S): PRJNA388163

REPOSITORIES: GEO

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Transcriptome data involved in Japanese flounder (Paralichthys olivaceus) albinism

Project description:In this study, a high-throughput sequencing strategy was employed to identify the mRNA involved in P. olivaceus albinism. Based on P. olivaceus genome, RNA-seq identified 21,787 know genes and 711 new genes by transcripts assembly. Of those, 235 genes exhibited significantly different expression pattern (fold change ≥2 or ≤0.5 and q-value≤0.05), including 194 down-regulated genes and 41 up-regulated genes in albino versus normally pigmented individuals. These genes were enriched to 81 GO terms and 9 KEGG pathways (p≤0.05). Among those, the pigmentation related pathways-Melanogenesis and tyrosine metabolism were contained.

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Transcriptome and microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

Project description:Transcriptome and microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

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Paralichthys olivaceus

Project description:Transcriptome data involved in Japanese flounder (Paralichthys olivaceus) albinism

| PRJNA388164 | ENA

Paralichthys olivaceus

Project description:microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

| PRJNA388163 | ENA

Transcriptome and microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

Project description:This SuperSeries is composed of the SubSeries listed below.

2017-07-13 | GSE99343 | GEO

Screening the target genes of IRF10 in Japanese flounder, Paralichthys olivaceus

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