Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS Optimisation SPE Oasis HLB Prime - EMP500 fecal sample

ABSTRACT: GNPS Optimisation SPE Oasis HLB Prime (Hydrophilic-Lipophilic-Balance, 30 mg with particle sizes of 30 um) using an EMP500 fecal sample. LC-MS/MS analysis of the different washing/elution steps on the Q-Exactive, using a C18 polar column. https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=2d2bb49239834407a5f1a8b0defad6e3 https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=3741451758824952886f765c9990a52b

INSTRUMENT(S): Q Exactive

ORGANISM(S): None

SUBMITTER: Pieter Dorrestein

PROVIDER: MSV000083395 | GNPS | Sun Feb 03 21:14:00 GMT 2019

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Teredinibacter sp. 2052S Quorum Sensing Untargeted Metabolomics

Project description:Raw LC-MS/MS data of crude extract of Teredinibacter sp. 2052S quorum sensing regulon https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=23f7062e523f49b18e13e4ca13715cfa

2021-12-23 | MSV000088613 | MassIVE

GNPS - IIN - Urine biomarker discovery

Project description:Diluted urine for biomarker discovery. Processed in MZmine 2.37.corr17.7_kei_merge2 GNPS link for IIN paper: https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=a5480529261b4a13bb867f2edad1dcbe

2019-07-29 | MSV000084148 | GNPS

GNPS Teredinibacter sp. 2052S Quorum Sensing Untargeted Metabolomics

Project description:Raw LC-MS/MS data of crude extract of Teredinibacter sp. 2052S quorum sensing regulon https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=23f7062e523f49b18e13e4ca13715cfa

2021-12-23 | MSV000088613 | GNPS

GNPS - Staphylococcus aureus with Solid Phase Extraction

Project description:MS/MS spectra were collected from Staphylococcus aureus bacteria isolated from patients with Atopic Dermatitis from lesional and nonlesional sites. Extractions were performed using 50/50 vol/vol ethyl acetate/methanol and extracts were loaded on SPE cartridges (Oasis HLB, Hydrophilic-Lipophilic-Balance, 30 mg with particle sizes of 30 um) before LC-MS/MS analysis.

2019-02-08 | MSV000083423 | GNPS

GNPS - IIN - Stachybotrys metabolites

Project description:Stachybotrys, natural product discovery study, extracts, filtrates, mycelium, wildtype, overexpression, Stachybotrysins, Stachybonoids, Stachybotrydials For ion identity networking paper. GNPS link: https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=0308d797c31a477292fe009030d03da7

2019-07-25 | MSV000084134 | GNPS

OASIS overexpression in murine podocyte cell line

Project description:Podocyte injury is involved in the onset and progression of various kidney diseases. We previously demonstrated that the transcription factor, old astrocyte specifically induced substance (OASIS) in myofibroblasts, contributes to kidney fibrosis, as a novel role of OASIS in the kidneys. Importantly, we found that OASIS is also expressed in podocytes; however, the pathophysiological significance of OASIS in podocytes remains unknown. Upon lipopolysaccharide (LPS) treatment, there is an increase in OASIS in murine podocytes. Enhanced serum creatinine levels and tubular injury, but not albuminuria and podocyte injury, are attenuated upon podocyte-restricted OASIS knockout in LPS-treated mice, as well as diabetic mice. The protective effects of podocyte-specific OASIS deficiency on tubular injury are mediated by protein kinase C iota (PRKCI/PKCι), which is negatively regulated by OASIS in podocytes. Furthermore, podocyte-restricted OASIS transgenic mice show tubular injury and tubulointerstitial fibrosis, with severe albuminuria and podocyte degeneration. Finally, there is an increase in OASIS-positive podocytes in the glomeruli of patients with minimal change nephrotic syndrome and diabetic nephropathy. Taken together, OASIS in podocytes contributes to podocyte and/or tubular injury, in part through decreased PRKCI. The induction of OASIS in podocytes is a critical event for the disturbance of kidney homeostasis.

2022-06-22 | GSE206525 | GEO

GNPS - American Gut Project - Subset of High vs Low Plant Eaters - MZmine Processing for FBMN

Project description:This desposit contains the MZmine project and files for Feature-Based Molecular Networking analysis after MZmine processing. The data are for plant eaters who consume more than 30 types of plants vs. those who do not. See the MSV000080186 at https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=6ab8eb3e05fb47dcac3b3bab03f00e67 [doi:10.25345/C5W946]

2019-07-15 | MSV000084095 | GNPS

Microarray of RNA from calvaria in WT and OASIS-/- (KO) mice

Project description:Investigation of whole genome gene expression level changes in OASIS KO calvaria compared to wild-type calvaria. To gain further insight into the potential mechanisms underlying the defective bone formation in OASIS KO mice, we compared the gene expression in calvaria between WT and OASIS KO mice using a microarray. Each sample of total RNA was collected from a number of mice.

2010-05-05 | E-GEOD-18062 | biostudies-arrayexpress

Microarray of RNA from calvaria in WT and OASIS-/- (KO) mice

2009-09-10 | GSE18062 | GEO

Effect of depletion of OASIS on gene expression in primary cultured mouse astrocytes during DNA damage response.

Project description:To investigate the roles of OASIS/CREB3L1 in astrocytes during DNA damage response, we established OASIS wild type and deficient primary cultured mouse astrocytes treated with or without anti-cancer drug doxorubicin. We then performed gene expression profiling analysis using data obtained from RNA-seq of 4 different cells.

2023-04-17 | GSE229480 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data