Proteomics

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Analysis of proteolytic processes in plasma and bone marrow interstitial fluid of pediatric B-ALL patients by HUNTER (High-efficiency Undecanal-based N Termini EnRichment)

ABSTRACT: Protein N-termini reveal fundamental regulatory mechanisms and their perturbation in disease. We present a robust, sensitive, scalable and automatable method called High-efficiency Undecanal-based N Termini EnRichment (HUNTER) for system-wide identification of thousands of N-termini from minute samples. Automated enrichment and identification of distinct N-terminal profiles in blood and bone marrow plasma from pediatric cancer as one of the applications of HUNTER.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Dr. Philipp Lange   Dr. Pitter F. Huesgen  

PROVIDER: MSV000083502 | MassIVE | Thu Feb 28 17:34:00 GMT 2019

SECONDARY ACCESSION(S): PXD012916

REPOSITORIES: MassIVE

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Publications

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples.

Weng Samuel S H SSH   Demir Fatih F   Ergin Enes K EK   Dirnberger Sabrina S   Uzozie Anuli A   Tuscher Domenic D   Nierves Lorenz L   Tsui Janice J   Huesgen Pitter F PF   Lange Philipp F PF  

Molecular & cellular proteomics : MCP 20190830 11

Protein N termini unambiguously identify truncated, alternatively translated or modified proteoforms with distinct functions and reveal perturbations in disease. Selective enrichment of N-terminal peptides is necessary to achieve proteome-wide coverage for unbiased identification of site-specific regulatory proteolytic processing and protease substrates. However, many proteolytic processes are strictly confined in time and space and therefore can only be analyzed in minute samples that provide i  ...[more]

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