ABSTRACT: Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Pisolithus microcarpus 441 Eucalyptus globulus metatranscriptome
Project description:Illumina HiSeq technology was used to generate mRNA profiles from in vitro Eucalyptus grandis roots interacting with two different Pisolithus microcarpus strains (SI-9 and SI-12) and under two different CO2 concentrations (400 and 650 ppm) . Control roots or ectomycorrhizal root tips were harvested after 1 month and used for RNA extraction. Paired-end (2X150bp) reads were generated and aligned to Eucalyptus grandis transcripts (http://www.phytozome.net/; primarytranscripts only) using CLC Genomics Workbench 6.
Project description:Illumina HiSeq technology was used to generate mRNA profiles from Pisolithus microcarpus basidiocarp compartments. Unconsolidated, young, and mature peridioles, as well as internal and free spores from three basidiocaps were harvested and used for RNA extraction. Paired-end reads of 100 bp were generated and aligned to Pisolithus microcarpus (http://genome.jgi.doe.gov/Pismi1/Pismi1.home.html) reference transcripts using CLC Genomics Workbench 7.
Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Tulasnella calospora - Serapias vomeracea metatranscriptome
Project description:Illumina HiSeq technology was used to generate mRNA profiles from Pisolithus microcarpus Si9, MW3, R4 or R10 ectomycorrhizal root tips compared to their respective free-living mycelium.
Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Rhyzoscyphus and Meliniomyces - Vaccinium myrtillus metatranscriptome
Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Oidiodendron maius strain Zn Vaccinium myrtillus metatranscriptome
