Proteomics

Dataset Information

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DeNovo Peptide Identification Deep Learning Training Set

ABSTRACT: A benchmark set of bottom-up proteomics data for training deep learning networks. It has data from 51 organisms and includes nearly 1 million peptides.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Stigmatella Aurantiaca (strain Dw4/3-1) Bifidobacterium Bifidum Dsm 20456 = Jcm 1255 Legionella Pneumophila Streptococcus Agalactiae Chryseobacterium Indologenes Streptomyces Sp. Cellulophaga Baltica 18 Citrobacter Freundii Alcaligenes Faecalis Bacillus Subtilis Subsp. Subtilis Str. 168 Methylomicrobium Alcaliphilum (strain Dsm 19304 / Ncimb 14124 / Vkm B-2133 / 20z) Francisella Tularensis Subsp. Novicida (strain U112) Delftia Acidovorans (strain Dsm 14801 / Sph-1) Listeria Monocytogenes Serotype 1/2a (strain 10403s) Faecalibacterium Prausnitzii Sl3/3 Cupriavidus Necator (strain Atcc 43291 / Dsm 13513 / N-1) (ralstonia Eutropha) Bacteria Bacteroides Fragilis (strain 638r) Coprococcus Comes Atcc 27758 Shewanella Oneidensis (strain Mr-1) Pseudomonas Putida Kt2440 Bacteroides Thetaiotaomicron (strain Atcc 29148 / Dsm 2079 / Nctc 10582 / E50 / Vpi-5482) Fibrobacter Succinogenes Subsp. Succinogenes S85 Rhodococcus Sp. (strain Rha1) Lactobacillus Casei Subsp. Casei Atcc 393 Bacillus Subtilis Subsp. Subtilis Str. Ncib 3610 Cellvibrio Gilvus (strain Atcc 13127 / Nrrl B-14078) Bifidobacterium Longum Subsp. Infantis (strain Atcc 15697 / Dsm 20088 / Jcm 1222 / Nctc 11817 / S12) Campylobacter Jejuni Synechococcus Elongatus (strain Pcc 7942) (anacystis Nidulans R2) Prevotella Ruminicola (strain Atcc 19189 / Jcm 8958 / 23) Cyanobacterium Stanieri Paracoccus Denitrificans Micrococcus Luteus (micrococcus Lysodeikticus) Dorea Formicigenerans Clostridium Ljungdahlii (strain Atcc 55383 / Dsm 13528 / Petc) Ruminococcus Gnavus Atcc 29149 Bacillus Cereus (strain Atcc 14579 / Dsm 31) Myxococcus Xanthus Dz2 Rhizobium Radiobacter (agrobacterium Tumefaciens) (agrobacterium Radiobacter) Sulfobacillus Thermosulfidooxidans Algoriphagus Marincola Hl-49 Rhodopseudomonas Palustris Streptomyces Griseorubens Acidiphilium Cryptum (strain Jf-5) Anaerococcus Hydrogenalis Dsm 7454 Mycobacterium Smegmatis Paenibacillus Polymyxa Atcc 842

SUBMITTER: Matthew Monroe  

LAB HEAD: Samuel Payne

PROVIDER: PXD010000 | Pride | 2018-06-13

REPOSITORIES: Pride

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Dataset's files

Source:
Action DRS
Biodiversity_A_cryptum_FeTSB_anaerobic_1_01Jun16_Pippin_16-03-39.mzML.gz Mzml
Biodiversity_A_cryptum_FeTSB_anaerobic_1_01Jun16_Pippin_16-03-39.pride.mgf.gz Mgf
Biodiversity_A_cryptum_FeTSB_anaerobic_1_01Jun16_Pippin_16-03-39.raw Raw
Biodiversity_A_cryptum_FeTSB_anaerobic_1_01Jun16_Pippin_16-03-39_msgfplus.mzid.gz Mzid
Biodiversity_A_cryptum_FeTSB_anaerobic_1_01Jun16_Pippin_16-03-39_msgfplus.pride.mztab.gz Mztab
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