Proteomics

Dataset Information

0

DeNovo Peptide Identification Deep Learning Test Set

ABSTRACT: A set of bottom-up proteomics data for testing the deep learning network trained with data in PXD010000

INSTRUMENT(S): Q Exactive

ORGANISM(S): Enterococcus Faecalis (streptococcus Faecalis) Caulobacter Crescentus (strain Na1000 / Cb15n) Akkermansia Muciniphila Atcc Baa-835 Halanaerobium Congolense

SUBMITTER: Matthew Monroe  

LAB HEAD: Samuel Payne

PROVIDER: PXD010613 | Pride | 2022-09-25

REPOSITORIES: Pride

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Dataset's files

Source:
Action DRS
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.mzML.gz Mzml
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.pride.mgf.gz Mgf
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.raw Raw
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39_msgfplus.mzid.gz Mzid
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39_msgfplus.pride.mztab.gz Mztab
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Publications

Uncovering Hidden Members and Functions of the Soil Microbiome Using <i>De Novo</i> Metaproteomics.

Lee Joon-Yong JY   Mitchell Hugh D HD   Burnet Meagan C MC   Wu Ruonan R   Jenson Sarah C SC   Merkley Eric D ED   Nakayasu Ernesto S ES   Nicora Carrie D CD   Jansson Janet K JK   Burnum-Johnson Kristin E KE   Payne Samuel H SH  

Journal of proteome research 20220706 8

Metaproteomics has been increasingly utilized for high-throughput characterization of proteins in complex environments and has been demonstrated to provide insights into microbial composition and functional roles. However, significant challenges remain in metaproteomic data analysis, including creation of a sample-specific protein sequence database. A well-matched database is a requirement for successful metaproteomics analysis, and the accuracy and sensitivity of PSM identification algorithms s  ...[more]

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