Proteomics

Dataset Information

0

DeNovo Peptide Identification Deep Learning Test Set

ABSTRACT: A set of bottom-up proteomics data for testing the deep learning network trained with data in PXD010000

INSTRUMENT(S): Q Exactive

ORGANISM(S): Enterococcus Faecalis (streptococcus Faecalis) Caulobacter Crescentus (strain Na1000 / Cb15n) Akkermansia Muciniphila Atcc Baa-835 Halanaerobium Congolense

SUBMITTER: Matthew Monroe  

LAB HEAD: Samuel Payne

PROVIDER: PXD010613 | Pride | 2022-09-25

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.mzML.gz Mzml
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.pride.mgf.gz Mgf
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39.raw Raw
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39_msgfplus.mzid.gz Mzid
Alverdy_Efae_1A_lys_13Jul13_Pippin_12-12-39_msgfplus.pride.mztab.gz Mztab
Items per page:
1 - 5 of 115
altmetric image

Publications

Uncovering Hidden Members and Functions of the Soil Microbiome Using <i>De Novo</i> Metaproteomics.

Lee Joon-Yong JY   Mitchell Hugh D HD   Burnet Meagan C MC   Wu Ruonan R   Jenson Sarah C SC   Merkley Eric D ED   Nakayasu Ernesto S ES   Nicora Carrie D CD   Jansson Janet K JK   Burnum-Johnson Kristin E KE   Payne Samuel H SH  

Journal of proteome research 20220706 8

Metaproteomics has been increasingly utilized for high-throughput characterization of proteins in complex environments and has been demonstrated to provide insights into microbial composition and functional roles. However, significant challenges remain in metaproteomic data analysis, including creation of a sample-specific protein sequence database. A well-matched database is a requirement for successful metaproteomics analysis, and the accuracy and sensitivity of PSM identification algorithms s  ...[more]

Similar Datasets

Proteomics DeNovo Peptide Identification Deep Learning Training Set
2018-06-13 | PXD010000 | Pride
Proteomics Nanodroplet processing platform for deep, quantitative proteome profiling of 10-100 mammalian cells
2018-01-24 | PXD006847 | Pride
Metabolomics RespectM revealed metabolic heterogeneity powers deep learning for reshaping the DBTL cycle
2023-06-29 | MTBLS3830 | MetaboLights
Other A Deep Learning Approach For Programmable RNA Switches
2020-08-12 | GSE149225 | GEO
Proteomics A Parts List for Fungal Cellulosomes Revealed by Comparative Genomics
2018-10-19 | PXD006325 | Pride
Proteomics Chemical profiling of live cell temporal redox dynamics in a photoautotrophic cyanobacterium
2015-08-24 | PXD000329 | Pride
Proteomics Quantitative Profiling of Protein S-Glutathionylation during Nanoparticle-Induced Oxidative Stress
2016-08-02 | PXD003356 | Pride
Proteomics,Multiomics Predicting species-resolved macronutrient acquisition during succession in a model phototrophic biofilm
2017-07-05 | PXD006440 | Pride
Proteomics Proteomics analysis of isolated plasma membrane and thylakoid membrane from Synechocystis species PCC 6803
2016-04-12 | PXD003079 | Pride
Proteomics Acetylation of Diverse Bacteria
2017-10-17 | PXD005851 | Pride