Proteomics

Dataset Information

0

Detection of SEPs by MS (Second Round)


ABSTRACT: Identifying smORFs and SEPs is technically and computationally challenging. Experimentally, techniques as ribosome profiling (Ribo-Seq and mass spectroscopy (MS) are used. Ribo-Seq sequences the mRNA and does not provide the translated frame, thus identifying proteins encoded by overlapping ORFs is not feasible. Herein we have used MS to characterize smORFomes of different Mycoplasma species and Escherichia coli. This data is used to corroborate the predictions of a random forest classifier that in silico predicts all the putative SEPs encoded by different bacterial genomes.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Escherichia Coli

TISSUE(S): Cell Culture

SUBMITTER: Samuel Miravet Verde  

LAB HEAD: Luis Serrano

PROVIDER: PXD010490 | Pride | 2019-10-14

REPOSITORIES: Pride

Dataset's files

Source:

Similar Datasets

2019-03-01 | PXD008243 | Pride
2007-03-21 | E-TABM-155 | biostudies-arrayexpress
2019-10-14 | PXD011038 | Pride
2016-07-05 | PXD002501 | Pride
2015-03-03 | PXD001611 | Pride
2012-07-28 | E-MEXP-3622 | biostudies-arrayexpress
2024-05-24 | PXD039838 | Pride
2023-05-06 | PXD016981 | Pride
2021-05-11 | PXD024851 | Pride
2012-11-14 | E-GEOD-34740 | biostudies-arrayexpress