Proteomics

Dataset Information

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Data in support of Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients


ABSTRACT: Objective. To analyse the pathogenesis of the diseases rheumatoid arthritis (RA) and spondyloarthritis (SpA) we investigated the protein composition in synovial fluid from the patients. Methods. Fifty-six synovial fluid (SF) were analysed with non-gel based proteomics from patients with RA (32) and SpA (24). Rheumatoid factor was measured in plasma, and cell-free DNA was measured in SF. Results. Two hundred proteins were quantified in the samples. The inflammatory proteins were more abundant in the RA group, specially proteins from neutrophil granulocytes. Cell-free DNA (cfDNA) in the SF was statistically associated with proteins that are known to form neutrophil extracellular traps (NETs). Plasma C-reactive protein (CRP), was correlated to other acute phase proteins in the SF. Minimal correlation was seen between acute phase proteins and proteins in NETs. Conclusions. The results show that in the synovial cavity in vivo neutrophils form NETs. This result sustains that neutrophils from RA patients are activated and are likely to undergo NETosis resulting in SF cfDNA specific of arthritis pathology with NETosis.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Rheumatoid Arthritis Disease Specific Synovial Fluid

DISEASE(S): Rheumatoid Arthritis

SUBMITTER: Allan Stensballe  

LAB HEAD: Allan Stensballe

PROVIDER: PXD010723 | Pride | 2021-09-08

REPOSITORIES: Pride

Dataset's files

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Action DRS
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Pt01_01.raw Raw
Pt01_02.raw Raw
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Publications

Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients.

Birkelund Svend S   Bennike Tue Bjerg TB   Kastaniegaard Kenneth K   Lausen Mads M   Poulsen Thomas Bouet Guldbæk TBG   Kragstrup Tue Wenzel TW   Deleuran Bent Winding BW   Christiansen Gunna G   Stensballe Allan A  

Clinical proteomics 20200806


<h4>Background</h4>The aetiologies and pathogeneses of the joint diseases rheumatoid arthritis (RA) and spondyloarthritis (SpA) are still not fully elucidated. To increase our understanding of the molecular pathogenesis, we analysed the protein composition of synovial fluid (SF) from rheumatoid arthritis (RA) and spondyloarthritis (SpA) patients.<h4>Methods</h4>Fifty-six synovial fluid samples (RA, n = 32; SpA, n = 24) were digested with trypsin, and the resulting peptides were separated by liqu  ...[more]

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