Proteomics

Dataset Information

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Label-Free Quantiative Analysis of Sepioloidea lineolata


ABSTRACT: Sepioloidea lineolata, the striped pyjama squid (family Sepidariidae), is a small species of benthic squid distributed along the Southern Indo-Pacfic coast of Australia. All Sepiadariid squids are known to secrete large volumes of viscous slime when stressed. The proteome of the slime, dorsal and ventral mantle muscle, the dorsal and ventral mantle epithelium and ventral mantle glands was analysed by combining label-free quantitative analysis using high resolution mass spectrometry data with an S. lineolata transcriptome assembled from give tissues including slime. A total of 28 highly positively differentially expressed proteins were identified within the slime and were predominately comprised of a host of enzymes including peptidases and protease inhibitors. Seven of these proteins contained predicted signal peptides, indicating classical secretion, with four proteins having no identifiable domains or similarity to any known proteins.

INSTRUMENT(S): LTQ Orbitrap Elite

ORGANISM(S): Sepioloidea Lineolata

TISSUE(S): Exocrine Glandular Secretion, Mantle Muscle

SUBMITTER: Nikeisha Caruana  

LAB HEAD: Associate Professor Jan Strugnell

PROVIDER: PXD013436 | Pride | 2020-02-25

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
DEanalysis_quantVSN_2019.Rmd Other
MGF699.zip Other
MT_proteingroups_SL201705.txt Txt
SlineolataMQ_20170328.fasta Fasta
raw699.zip Other
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Publications

Quantitative Proteomic Analysis of the Slime and Ventral Mantle Glands of the Striped Pyjama Squid (<i>Sepioloidea lineolata</i>).

Caruana Nikeisha J NJ   Strugnell Jan M JM   Finn Julian J   Faou Pierre P   Plummer Kim M KM   Cooke Ira R IR  

Journal of proteome research 20200305 4


Cephalopods are known to produce an extensive range of secretions including ink, mucus, and venom. Sepiadariidae, a family of small, benthic bobtail squids, are notable for the high volume of viscous slime they emit when stressed. One species, <i>Sepioloidea lineolata</i> (striped pyjama squid), is covered with glands along the perimeter of the ventral mantle, and these structures are hypothesized to be the source of its slime. Using label-free quantitative proteomics, we analyzed five tissue ty  ...[more]

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