Proteomics

Dataset Information

0

Protocol for performing and analyzing TPP-TR and TPP-CCR experiments


ABSTRACT: Explore the effect of Panobinostat on the thermal stability of the proteins of the K562 cell line proteome.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): K-562 Cell, Cell Line Cell

SUBMITTER: Maria Faelth Savitski  

LAB HEAD: Marcus Bantscheff

PROVIDER: PXD013774 | Pride | 2019-05-24

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
0474_F1_R1_P85192B02_TMT10.raw.gz Raw
0474_F1_R1_P85192B03_TMT10.raw.gz Raw
0474_F1_R1_P85192B04_TMT10.raw.gz Raw
0474_F1_R1_P85192B05_TMT10.raw.gz Raw
0474_F1_R1_P85192B06_TMT10.raw.gz Raw
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Publications

Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry.

Franken Holger H   Mathieson Toby T   Childs Dorothee D   Sweetman Gavain M A GM   Werner Thilo T   Tögel Ina I   Doce Carola C   Gade Stephan S   Bantscheff Marcus M   Drewes Gerard G   Reinhard Friedrich B M FB   Huber Wolfgang W   Savitski Mikhail M MM  

Nature protocols 20150917 10


The direct detection of drug-protein interactions in living cells is a major challenge in drug discovery research. Recently, we introduced an approach termed thermal proteome profiling (TPP), which enables the monitoring of changes in protein thermal stability across the proteome using quantitative mass spectrometry. We determined the intracellular thermal profiles for up to 7,000 proteins, and by comparing profiles derived from cultured mammalian cells in the presence or absence of a drug we sh  ...[more]

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