Proteomics

Dataset Information

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Thrombospondin repeats secreted by C-mannosyltransferase-deficient mammalian cells


ABSTRACT: C-mannosylation in addition to N- and O-glycosylation is a further but less well studied type of protein glycosylation taking place in the endoplasmic reticulum (ER) characterised by the modification of tryptophan residues with a single mannose effecting protein folding, secretion and/or function. Motivated by an interest in the functional role of C-mannosylation for early developmental processes, we aimed for the functional inactivation of the C mannosyltransferases DPY19L1 and DPY19L3, respectively, and excised parts of their coding sequence from the genome of the hiPSC line CBiPSC2 by applying CRISPR Cas9. To determine the effect of the genomic deletions in DPY19L1 or DPY19L3 on C-mannosylation, TSR2 and TSR3 of human thrombospondin 1 (THBS1) was recombinantly expressed in WT and KO hiPSCs followed by purification an LC-MS analysis. The results are in accordance to our previous findings that DPY19L1 is mainly acting on W1 and W2 whereas DPY19L3 acts on W3 of WxxWxxWxxC motifs of TSRs and proves the functional inactivation of the respective C-mannosyltransferases in the hiPSCs model. A secretome analysis of C mannosyltransferase deficient hiPSCs revealed that secretion of numerous proteins was reduced in the mutants including ADAMTS16, which was previously reported to be essential for optic fissure fusion in zebrafish. In order to analyse C-mannosylation of ADAMTS16, its TSR1 was recombinantly expressed in CHO-K1 WT, DPY19L1 KO and DPY19L3 KO cells, purified and analysed by LC MS analysis. The results revealed that the WSDWSSWSPC motif of TSR1 of ADAMTS16 can be C-mannosylated at all three tryptophan residues. Deletion of DPY19L1 prevented C-mannosylation of the two first tryptophans whereas C-mannosylation of the third tryptophan was not detected in the DPY19L3-mutant.

INSTRUMENT(S): Q-Tof ultima

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture

SUBMITTER: Karsten Cirksena  

LAB HEAD: Falk Büttner

PROVIDER: PXD024192 | Pride | 2021-06-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
ADAMTS16_L1_CHO_QTOF_DDA.csv Csv
ADAMTS16_L1_CHO_QTOF_DDA.pdf Pdf
ADAMTS16_L1_Tryp_LCDDA.raw.7z Raw
ADAMTS16_L1_Tryp_LCMS.raw.7z Raw
ADAMTS16_L3_CHO_QTOF_DDA.csv Csv
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Publications

The C-Mannosylome of Human Induced Pluripotent Stem Cells Implies a Role for ADAMTS16 C-Mannosylation in Eye Development.

Cirksena Karsten K   Hütte Hermann J HJ   Shcherbakova Aleksandra A   Thumberger Thomas T   Sakson Roman R   Weiss Stefan S   Jensen Lars Riff LR   Friedrich Alina A   Todt Daniel D   Kuss Andreas W AW   Ruppert Thomas T   Wittbrodt Joachim J   Bakker Hans H   Buettner Falk F R FFR  

Molecular & cellular proteomics : MCP 20210508


C-mannosylation is a modification of tryptophan residues with a single mannose and can affect protein folding, secretion, and/or function. To date, only a few proteins have been demonstrated to be C-mannosylated, and studies that globally assess protein C-mannosylation are scarce. To interrogate the C-mannosylome of human induced pluripotent stem cells, we compared the secretomes of CRISPR-Cas9 mutants lacking either the C-mannosyltransferase DPY19L1 or DPY19L3 to WT human induced pluripotent st  ...[more]

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