Proteomics

Dataset Information

0

Paediatric Saliva Protein Library (Burn patients and Healthy Controls) and SWATH analysis


ABSTRACT: A paediatric saliva protein spectral library was created using drool samples collected from children with small area burn injury as well as healthy controls. Iso-electric focussing, LDS-PAGE and a combination of both fractionation methods were utilised to increase the protein coverage of the library. This resulted in the identification of 1310 proteins at a 10% FDR cut-off. The library samples were analysed using DDA-MS. The generated protein spectral library was used to quantify the abundance of 742 proteins in each individual participant sample using SWATH-MS. All samples were run on a Sciex TripleTOF 6600 mass spectrometer, and the data was processed using the OneOmics Suite v3.0 (SCIEX). Index retention time proteins were used in this experiment. The effect of burn injury and various burn characteristics on salivary protein abundance profiles were evaluated.

INSTRUMENT(S): TripleTOF 6600

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Saliva

DISEASE(S): Wounds And Injuries

SUBMITTER: Leila Cuttle  

LAB HEAD: Leila Cuttle

PROVIDER: PXD028078 | Pride | 2025-01-29

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
20200628_SWATH_LC111.wiff Wiff
20200628_SWATH_LC111.wiff.scan Wiff
20200628_SWATH_LC113.wiff Wiff
20200628_SWATH_LC113.wiff.scan Wiff
20200628_SWATH_LC114.wiff Wiff
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