Proteomics

Dataset Information

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Analysis of the GFP-labelled β-dystroglycan interactome in Hek-293 transfected cells reveals novel intracellular networks


ABSTRACT: So far very little is known about the fine regulation of some of these intracellular interactions of β-DG and how they are perturbed in diseases. To start filling this gap, HEK-293 cells were transiently transfected with a plasmid carrying the β-DG subunit with GFP fused at its C-terminus. Immunoprecipitation by anti-GFP antibodies followed by shotgun proteomic analysis to investigate the proteins exclusively matching for β-DG binding, applying the following filters to MS identification data: high confidence, peptide rank 1, peptide length minimum 9 amino acid residues and selecting 2 peptides per protein. A series of already known β-DG interactors have been found, whilst significant new matches, which include potential novel β-DG interactors and their related networks, were identified in diverse subcellular compartments.

INSTRUMENT(S): LTQ Orbitrap Elite

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture

SUBMITTER: Claudia Desiderio  

LAB HEAD: Claudia Desiderio, Andrea Brancaccio, Francesca Sciandra

PROVIDER: PXD043909 | Pride | 2024-02-12

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
BDG_GFPIP_IIIrun1_04042022.mgf Mgf
BDG_GFPIP_IIIrun1_04042022.msf Msf
BDG_GFPIP_IIIrun1_04042022.raw Raw
BDG_GFPIP_IIIrun2_04042022.mgf Mgf
BDG_GFPIP_IIIrun2_04042022.msf Msf
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