Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The study of molecular mechanisms of koi body colour epigenetics

ABSTRACT: The study of molecular mechanisms of koi body colour epigenetics

PROVIDER: PRJEB19194 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1806610_1.fastq.gz	Fastqsanger.gz
	ERR1806610_2.fastq.gz	Fastqsanger.gz
	ERR1806611_1.fastq.gz	Fastqsanger.gz
	ERR1806611_2.fastq.gz	Fastqsanger.gz
	ERR1806612_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Cyprinus carpio 'koi' Raw sequence reads

Project description:Genome-wide analysis of skin color-related lncRNA and mRNA expression in Koi carp, Cyprinus carpio L. LncRNAs information linked to fish skin color regulation is over-limited. In this study, Illumina sequencing and bioinformatics were primarily conducted on black, white and red skin colors of Koi carp. A total of 590,415,050 clean reads, 446,614 putative transcripts, 4,252 known and 72,907 novel lncRNAs were simultaneously obtained, respectively. Out of these genes, 92 significant differentially expressed lncRNAs and 722 mRNAs were excavated. Ccr_lnc5622441, Ccr_lnc765201 were found up-regulated in black and red skins; Ccr_lnc14074601 were up-regulated in white skin; and premelanosome proteins a (Pmela), tyrosinase (Tyr) were up-regulated in black skin, etc. Quantitative real-time PCR (qRT-PCR) further validated 12 differentially expressed genes were consistent with RNA-seq. Moreover, 70 lncRNAs on 107 target mRNAs in cis and 79 lncRNAs on 41,625 target mRNAs in trans were investigated, the networks revealed one lncRNAs can connected with numerous mRNAs, vice versa. These findings broadened the lncRNAs landscape of skin colors and provided new insights into the mechanisms underlying lncRNAs mediated pigmentation and differentiation in Koi carp.

2019-01-15 | GSE125039 | GEO

Physiological responses and molecular regulatory mechanisms during leaf colour change in Acer rubrum L.

Project description:In order to investigate the physiological and biochemical characteristics and molecular mechanisms during the leaf colour change of Acer rubrum L, this study used Acer rubrum L. 'Autumn Blaze' cuttings as material and analysed the transcriptome and miRNAs of Acer rubrum L leaves under different light and temperature treatments. The transcriptome and miRNAs of Acer rubrum L leaves were analysed under different light and temperature treatments, and miRNA-mRNA association analysis was performed for the differentially expressed mRNAs and miRNAs.

2023-03-02 | GSE226127 | GEO

Cyprinus carpio 'koi'

Project description:Cyprinus carpio 'koi' Raw sequence reads

| PRJNA479938 | ENA

Cyprinus carpio 'koi'

Project description:Cyprinus carpio 'koi' Raw sequence reads

| PRJNA508277 | ENA

Cyprinus carpio 'koi'

Project description:Cyprinus carpio strain:koi golden Genome sequencing

| PRJNA1191556 | ENA

Gene expression profile at single cell level of two colored skin (red and white) from koi carp.

Project description:Fish are richly and diversely coloured and have a complex palette of pigment cells. We first investigated the diversity of skin cells in Kohaku koi by single-cell sequencing.

2024-12-20 | GSE283437 | GEO

Colour analysis in Fenneropenaeus merguiensis

Project description:Differential gene expression analysis of three F. merguiensis colour groups (dark, light, albino), using custom microarrays.

2011-09-15 | GSE30346 | GEO

Salmon louse Colour variants

Project description:Salmon louse Colour variants

| PRJEB42583 | ENA

EPIGENETICS OF ALM

Project description:EPIGENETICS OF ALM

| PRJNA551390 | ENA

Cyprinus carpio 'koi' strain:black

Project description:Cyprinus carpio strain:koi var black Genome sequencing