Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of technologies

ABSTRACT: Comparison of technologies

PROVIDER: PRJEB26322 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2530950.fastq.gz	Fastqsanger.gz
	ERR2530950_1.fastq.gz	Fastqsanger.gz
	ERR2530950_2.fastq.gz	Fastqsanger.gz
	ERR2530951.fastq.gz	Fastqsanger.gz
	ERR2530951_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Project description:High-throughput systems for gene expression profiling have been developed and matured rapidly through the past decade. Broadly, these can be divided into two categories: hybridization-based and sequencing-based approaches. With data from different technologies being accumulated, concerns and challenges are raised regarding data comparability and agreement across technologies. Within an ongoing large-scale cross-platform data comparison framework, we report here a comparison based on identical samples between one-dye DNA microarray platforms and MPSS (Massively Parallel Signature Sequencing). The DNA microarray platforms generally provided highly correlated data, while moderate correlations between microarrays and MPSS were obtained. Disagreements between the two types of technologies can be attributed to limitations inherent to both technologies. The variation found between pooled biological replicates underlines the importance of exercising caution in identification of differential expression, especially for the purposes of biomarker discovery. Based on different principles, hybridization-based and sequencing-based technologies should be considered complementary to each other, rather than competitive, and currently, both provide indispensable tools for transcriptome profiling. Keywords: biological replicates

2007-01-01 | GSE6313 | GEO

Small Sample Amplification Technologies

Project description:This sample is part of a study that compares small sample amplification technologies. The analysis looks at differential gene expression when compared to one round of T7 amplification. A tumor cell line was used in comparison to a human reference RNA in this study. Keywords = amplification Keywords = small sample Keywords = Affymetrix Keywords: other

2005-06-03 | GSE2723 | GEO

A cross-comparison of technologies for the detection of microRNAs from FFPE samples of hepatoblastoma patients

Project description:A cross-comparison of technologies for the detection of microRNAs from FFPE samples of hepatoblastoma patients

| PRJNA262944 | ENA

Benchmarking Sequence Technologies for Virome Sequencing

Project description:Benchmarking Sequence Technologies for Virome Sequencing

| PRJEB56639 | ENA

Comparing 10x Visium spatial transcriptomic technologies

Project description:Comparing 10x Visium spatial transcriptomic technologies

| PRJNA1071205 | ENA

Comparing two transcriptome technologies - sequencing match microarrays [Array]

Project description:Next-generation sequencing has emerged as a promising platform for whole genome transcriptome profiling. The microarray technology has in contrast a long track record, but may suffer from issues related to background fluorescence and non-specific hybridization. The two technologies have been compared for eukaryotic transcriptomes in various studies. However, for prokaryotes information on comparative performance of the two technologies is sparse. We thus compared the two technologies for Streptococcus thermophilus. With just single experiments there was a strong correlation between the technologies.

2012-06-10 | GSE34461 | GEO

16S Sequencing in woman subjected to Assisted Reproductive Technologies

Project description:We performed a 16S sequencing analysis on Cervical Swab of women undergoing Assisted Reproductive Technologies

2023-11-17 | E-MTAB-11151 | biostudies-arrayexpress

Comparing two transcriptome technologies - sequencing match microarrays [RNA-Seq]

2012-06-10 | GSE34477 | GEO

Comparing two transcriptome technologies - sequencing match microarrays

Project description:Comparing two transcriptome technologies - sequencing match microarrays

| PRJNA151341 | ENA

Comparison of next-generation technologies and bioinformatic pipelines for capsular typing of Streptococcus pneumoniae

Project description:Next-generation technologies and bioinformatic pipelines for S. pneumoniae capsular typing

| PRJEB57405 | ENA