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Bisulfite sequencing of wild type plants and H1 mutants

ABSTRACT: Bisulfite sequencing of wild type Arabidopsis plants and H1 mutants

PROVIDER: PRJEB6953 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR577144_1.fastq.gz	Fastqsanger.gz
	ERR577144_2.fastq.gz	Fastqsanger.gz
	ERR577145_1.fastq.gz	Fastqsanger.gz
	ERR577145_2.fastq.gz	Fastqsanger.gz
	ERR577146_1.fastq.gz	Fastqsanger.gz

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Bisulfite sequencing of wild type Arabidopsis plants and H1 mutants

Project description:Experiment was performed to assess the effect of H1 histones knock-out on DNA methylation under control conditions and a role of H1.3 in maintaining stress-induced menthylation response.

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Comparative expression analysis of wild-type and OsC3'H1-knockout rice plant by RNA sequencing

Project description:Knockout of a gene encoding p-coumaroyl ester 3-hydroxylase (OsC3'H1) leads to increase p-hydroxyphenyl (H) lignin aromatic composition in rice. We compared the global gene expression profiles of wild-type and OsC3'H1-knockout mutants by RNA sequencing to examine the possible effects of OsC3'H1 disruption on gene expression. We subsequently applied the up- and down-regulated gene sets to gene ontology term enrichment analysis. The results demonstrated that biotic stress-related gene expressions were elevated and, in contrast, photosynthesis-repated gene expression were depressed in the mutant compared with wild-type plants.

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Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type

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Whole Genome Bisulfite Sequencing in wild type plants, and two RNAi transgenic lines, KD2 and KD5.

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Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type

Project description:Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in rdm16ros1, ros1, nrpd1ros1 mutants and examine the effect of RDM16 on DNA methylation 4 samples examined: C24 wild type with RD29A-LUC transgene, rdm16ros1 double mutant, ros1 mutant, nrpd1ros1 mutant (all in C24 background with RD29A-LUC transgene)

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Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT

Project description:Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in ros1, idm1, and rdd mutants and identify hypermethylated regions comparing to wild type Arabidopsis plants. Examination of 3 different mutants' methylome. 8 samples (3 mutants, 1 WT, each has two biological replicates)

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Whole genome bisulfite sequencing of Medicago truncatula A17 wild type and lss mutants.

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| S-EPMC7110649 | biostudies-literature

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