Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Systematic characterization of immunoglobulin loci and deep sequencing of the expressed repertoire in the Atlantic cod

ABSTRACT: Systematic characterization of immunoglobulin loci and deep sequencing of the expressed repertoire in the Atlantic cod

PROVIDER: PRJEB72311 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12640200_1.fastq.gz	Fastqsanger.gz
	ERR12640200_2.fastq.gz	Fastqsanger.gz
	ERR12640201_1.fastq.gz	Fastqsanger.gz
	ERR12640201_2.fastq.gz	Fastqsanger.gz
	ERR12640202_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 56

Similar Datasets

Systematic characterization of immunoglobulin loci and deep sequencing of the expressed repertoire in the Atlantic cod

Project description:5'RACE sequencing of B-cell receptors from spleen samples of Atlantic cod. Both IgH and all isotypes of IgL were sequenced with C gene specific primers.

2024-06-24 | E-MTAB-13762 | biostudies-arrayexpress

Atlantic Cod Early Development

Project description:Gene expression profiling of Atlantic cod (Gadus morhua) embryogenesis

2011-06-15 | E-TABM-1156 | biostudies-arrayexpress

Transcriptome profiling of the antiviral immune response in Atlantic cod macrophages

Project description:This study was conduct to identify the virus-responsive transcripts in Atlantic cod, using viral mimic, polyriboinosinic polyribocytidylic acid (pIC)

2016-08-31 | GSE70808 | GEO

Microarray analysis of gene expression of Atlantic cod from different Baltic Sea regions

Project description:The Atlantic cod (Gadus morhua L.) is one of the most important species in the Baltic Sea with high ecological and economical value. To explore the differences in adaptation to salinity between Baltic cod from different regions, western (Kiel Bight) and eastern (Gdańsk Bay) samples were analyzed through oligonucleotide microarray.

2019-01-21 | GSE122988 | GEO

Quantitative proteomics of liver from methylmercury-exposed Atlantic cod

Project description:In order to investigate the underlying mechanisms of methylmecury (MeHg)-mediated toxicity to Atlantic cod (Gadus morhua), we analyzed the liver proteome of fish exposed in vivo to MeHg (0, 0.5, 2 mg/kg body weight) for 2 weeks. Label-free quantitative mass spectrometry enabled quantification of 1143 proteins, and 125 were differentially regulated between MeHg-treated samples and controls. Six proteins among the top differentially regulated (T23O, GLNA EPS8L2, APOA4, RAP1B, CZTZ) were analyzed using selected reaction monitoring (SRM). Supported by bioinformatics analyses, we conclude that MeHg disrupts mainly redox homeostasis and energy generating metabolic pathways in cod liver, the latter potentially modulated through MeHg-induced oxidative stress.

2016-08-09 | PXD004311 | Pride

Atlantic cod lymphocyte subclusters

Project description:Atlantic cod scRNAseq Immune system

| PRJEB47815 | ENA

scRNA Atlantic cod

Project description:Single cell transcriptome profiling of the Atlantic cod immune system

| PRJEB39706 | ENA

Characterizing adjuvants’ effects at the murine immunoglobulin repertoire level

Project description:Characterizing adjuvants’ effects at the murine immunoglobulin repertoire level

| PRJNA951738 | ENA

Quantitative proteomics of liver from PCB 153 exposed Atlantic cod

Project description:In order to investigate the underlying mechanisms of PCB 153 mediated toxicity to Atlantic cod (Gadus morhua), we analyzed the liver proteome of fish exposed to various doses of PCB 153 (0, 0.5, 2 and 8mg/kg body weight) for two weeks and examined the effects on expression of liver proteins using quantitative proteomics. Label-free mass spectrometry enabled quantification of 1272 proteins, and 78 were differentially regulated between PCB 153 treated samples and controls. Two proteins downregulated due to PCB 153 treatment, Glutathione S-transferase theta 1 (GSTT1) and sulfotransferase family protein 1 (ST2B1), were verified using selected reaction monitoring (SRM). Supported by bioinformatics analyses, we concluded that PCB 153 perturbs lipid metabolism in the Atlantic cod liver and that increased levels of lipogenic enzymes indicate increased synthesis of fatty acids and triglycerides.

2017-01-17 | PXD004362 | Pride

Effects of pollution on liver of Atlantic cod

Project description:Effects of oil pollution and persistent organic pollutants (POPs) on the glycerophospholipids in the liver of male Atlantic cod (Gadus morhua)

2012-11-01 | E-MTAB-1209 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data