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Effects of the Sox17 ∆50 mutation on SOX17 function in mouse embryonic liver development

ABSTRACT: Effects of the Sox17 ∆50 mutation on SOX17 function in mouse embryonic liver development

PROVIDER: PRJEB74456 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR12815661_1.fastq.gz	Fastqsanger.gz
	ERR12815661_2.fastq.gz	Fastqsanger.gz
	ERR12815662_1.fastq.gz	Fastqsanger.gz
	ERR12815662_2.fastq.gz	Fastqsanger.gz
	ERR12815663_1.fastq.gz	Fastqsanger.gz

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Effects of the Sox17 ∆50 mutation on SOX17 function in mouse embryonic liver development

2024-10-31 | E-MTAB-13982 | biostudies-arrayexpress

Effects of the Sox17∆50/GFP mutation on SOX17 function in mouse embryonic liver development

Project description:To determine the role of specific cis-regulatory elements within the Sox17 endoderm-preferential TSS2 promoter, we generated Sox17∆50 mutant animals, crossed them to a Sox17GFPCre (a Sox17 null allele), and surveyed how this mutation affected Sox17 expression. Livers were isolated from E12.5 Sox17∆50/GFPCRe compound heterozygous and Sox17+/+ embryos (n = 4 of each genotype), RNA isolated, and bulk RNA-Seq performed.

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Effects of the Sox17∆50 mutation on SOX17 function in mouse embryonic biliary development

Project description:To determine the role of specific cis-regulatory elements within the Sox17 endoderm-preferential TSS2 promoter, we generated Sox17∆50 mutant animals and surveyed how this mutation altered Sox17 expression. EPCAM+/CXCR4+ endodermal cells were isolated from E10.5 Sox17∆50/∆50 and Sox17+/+ embryos (n = 1 of each genotype). Posterior foregut and midgut regions of embryos were dissected by removal of embryonic head, heart, tail, limb buds, posterior and dorsal body trunk. Sox17+/+ and Sox17Δ50/Δ50 cell samples were labelled with barcodes from 3'CellPlex Kit (10X Genomics) and subsequently pooled together for single isolation, library preparation and sequencing.

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Effects of the Sox17∆50/GFP mutation on SOX17 function in mouse embryonic liver development

Project description:Effects of the Sox17∆50/GFP mutation on SOX17 function in mouse embryonic liver development

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Effects of the Sox17∆50 mutation on SOX17 function in mouse embryonic biliary development

Project description:Effects of the Sox17∆50 mutation on SOX17 function in mouse embryonic biliary development

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Effects of the Sox17mut5 mutation on SOX17 function in mouse embryonic gallbladder development

Project description:To determine the role of specific cis-regulatory elements within the Sox17 endoderm-preferential TSS2 promoter, we generated Sox17mut5 mutant animals and surveyed how this mutation altered Sox17 expression. Gallbladders were isolated from P21 Sox17mut5/mut5 and Sox17+/+ (n = 4 of each genotype), RNA isolated, and bulk RNA-Seq performed.

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Effects of the Sox17mut5 mutation on SOX17 function in mouse embryonic gallbladder development

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Gene Expression Analysis of Sox17-induced Mouse Embryonic Stem Cells

Project description:To determine the effect of Sox17 overexpression in mouse embryonic stem (ES) cells, we performed gain-of-function analysis by generating ES cell lines carrying a doxycycline inducible FLAG-tagged Sox17 transgene. We treated Sox17-inducible ES cells with doxycycline, collected RNA and performed genome-wide transcriptional analysis. We found that genes invovled in adhesion function and basement membrane establishment were transcriptionally upregulated in ES cells upon induction of Sox17. We also observed downregulation in the transcription of genes involved in pathways known to be functionally important for ES cell pluripotency and self-renewal. However, Sox17 expression was not sufficient to rapidly down-regulate Sox2, Nanog, and Oct4. Two independent doxycycline inducible Sox17-overexpressing mouse embryonic stem cells were derived. The genes expression changes in the Sox17-induced cells were compared to untreated (no doxycycline) controls and to control cells treated with or without doxycycline. The total RNA from these samples were amplified using Ambion Illumina TotalPrep RNA Amplification kit and arrayed on Illumina MouseRef8 v2 chips.

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Gene expression profiling in liver from control versus mutant Sox17 SHIVA fasted C57BL/6 mice

Project description:The objective of this study was to test the impact of a mutation in the Sox17 gene (SHIVA mouse) on the ability of liver to mount a transcriptional response to 24 hours of fasting.

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Gene Expression Analysis of Sox17-induced Mouse Embryonic Stem Cells

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