Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ancient canid genomes from Gotland

ABSTRACT: Gray wolves associated with humans in prehistoric Scandinavia

PROVIDER: PRJEB81829 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	G.11.bam	Bam
	G.11.bam.bai	Bam
	G.7.bam	Bam
	G.7.bam.bai	Bam
	ERR14295185.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Pervasive effects of aging on gene expression in wild wolves

Project description:We sequenced total RNA from whole blood samples of 27 wild gray wolves from Yellowstone National Park.

2016-07-27 | GSE80440 | GEO

Ancient Iberian genomes

Project description:This study includes mitogenomes and whole nuclear genomes from prehistoric Iberian remains

| PRJEB29189 | ENA

Pervasive effects of aging on gene expression in wild wolves

Project description:We sequenced total RNA from whole blood samples of 27 wild gray wolves from Yellowstone National Park. Gene expression level analysis of both male and female wolves, ranging from ages 0.8-8.8 years.

2016-07-27 | E-GEOD-80440 | biostudies-arrayexpress

Gene expression response of wolf epidermal keratinocytes to PolyI:C and canine distemper virus

Project description:The goal of the study was to test whether CBD103 genotype of North American gray wolves impacts the gene expression response to polyI:C or to live canine distemper virus. We established 24 primary cultures of epidermal keratinocytes from skin punches of North American gray wolves, and also generated an immortalized keratinocyte line and a CRISPR/Cas9 edited cell line. We evaluated the gene expression response of cells to either 24 hours challenge with 1 ug/ml polyI:C or to five days challenge with live canine distemper virus (100 TCID50/ml). Every challenged cell culture had a paired null control sample (plated and collected at same time points).

2021-05-06 | GSE163163 | GEO

Canis lupus

Project description:Genome sequencing of gray wolves

| PRJNA714797 | ENA

Analysis of structural diversity in wolf-like canids reveals post-domestication variants

Project description:This study uses a custom made Nimblegen aCGH chip that targeted all segmental duplications in the canine genome to identify associated CNVs. A total of 23 hybridizations were performed in a panel of diverse dogs and a single wolf. This study focuses on the use a custom made Nimblegen aCGH chip to genotype 1,611 dog CNVs in 23 wolf-like canids (4 purebred dogs, one dingo, 15 gray wolves, one red wolf, one coyote and one golden jackal) to identify CNVs that may have arisen after domestication

2014-06-05 | E-GEOD-58195 | biostudies-arrayexpress

Project description:De novo mutation rate estimation in Yellowstone gray wolves

| PRJNA543877 | ENA

Neolithic ancient DNA genomes from North Africa and Souther Spain

Project description:Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe

| PRJEB22699 | ENA

Project description:Whole genome sequence data from contemporary northwestern Iberian gray wolves

| PRJNA1148792 | ENA

Studies of modern Italian dog populations reveal multiple patterns for domestic breed evolution

Project description:Through thousands of years of breeding and strong human selection, the dog (Canis lupus familiaris) exists today within hundreds of closed populations throughout the world, each with defined phenotypes. A singular geographic region with broad diversity in dog breeds presents an interesting opportunity to observe potential mechanisms of breed formation. Italy claims 14 internationally recognized dog breeds, with numerous additional local varieties. To determine the relationship among Italian dog populations, we integrated genetic data from 263 dogs representing 23 closed dog populations from Italy, seven Apennine gray wolves. Using 142,840 genome-wide SNPs, this dataset was used in the identification of breed development routes for the Italian breeds that included divergence from common populations for a specific purpose, admixture of regional stock with that from other regions, and isolated selection of local stock with specific attributes.

2018-10-10 | GSE121027 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data