Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S Sequencing of sorted mouse fecal bacterial cells during dextran sodium sulfate colitis

PROVIDER: PRJNA1040873 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26873000_1.fastq.gz	Fastqsanger.gz
	SRR26873000_2.fastq.gz	Fastqsanger.gz
	SRR26873001_1.fastq.gz	Fastqsanger.gz
	SRR26873001_2.fastq.gz	Fastqsanger.gz
	SRR26873002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 338

Similar Datasets

Project description:16S Sequencing of mouse fecal bacteria during dextran sodium sulfate colitis

| PRJNA1040262 | ENA

Project description:Whole genome shotgun sequencing on mouse fecal bacteria during dextran sodium sulfate colitis

| PRJNA1040965 | ENA

Expression data from untreated and DSS-treated Adamts12 WT and KO mice

2012-09-01 | GSE40529 | GEO

DSS-colitis induced in young age accelerates the onset of cognitive defects in Tg2576 mice, a model of Alzheimer disease

Project description:In this study we explored if colitis induced by dextran sulfate sodium (DSS) in young, presymptomatic/preplaque mice worse and/or anticipate age-dependent cognitive impairment in Tg2576, a widely used mouse model of Alzheimer disease.

2024-05-29 | GSE253108 | GEO

Evaluation of bovine milk extracellular vesicles on mouse intestinal gene expression

Project description:Intestinal tissue samples from dextran sodium sulfate-induced colitis mice were analyzed on their transcriptomic changes using RNA-seq to elucidate the effects of extracellular vesicles pretreatment on the colitis-associated gene expressions.

2021-06-23 | GSE178663 | GEO

Hematopoietic stem and progenitor cells integrate microbial signals to promote gut tissue repair

Project description:This study examines how bone marrow (BM)-resident hematopoietic stem and progenitor cells (HSPCs) are activated by bacterial insults for lineage specification to replenish the host hemato-immune system. We use the dextran sulfate sodium (DSS) colitis model to cause acute gut inflammation and observe molecular changes that occur in MPP2s, which expand both in the BM and MLN upon DSS treatment.

2022-07-07 | GSE207403 | GEO

Effects of dietary folic acid levles on colitis-associated tumorigenesis.

Project description:Folic acid supplementation (8 mg/kg diet) promotes colon tumor formation in mice with established colitis induced by carcinogen azoxymethane (AOM) and dextran sulfate sodium sulfate (DSS). This induction of colon tumors was associated with hypomethylation of DNA cased by folic acid supplementation.

2023-05-31 | GSE168525 | GEO

Effects of dietary folic acid on methylation status of colon non-neoplastic epithelium and dysplasia in mice with colitis

2023-09-07 | GSE168975 | GEO

Expression data from untreated and DSS-treated Adamts12 WT and KO mice

Project description:Adamts12-deficient mice undergo more severe colitis than WT mice after induction with DSS. We used microarrays to determine the gene expression differences between Adamts12-deficient and WT mice during ulcerative colitis induced with DSS (dextran sodium sulfate) Fragments of distal colon from DSS-treated (2% DSS during 7 days and 1 day of recovery) and untreated Adamts12-deficient and WT mice were obtained for RNA extraction and hybridiztion with Affymetrix microarrays

2012-09-01 | E-GEOD-40529 | biostudies-arrayexpress

Transcriptional profiling of murine distal colon from C57BL/6 (WT) and Stat2KO mice during acute DSS colitis.

Project description:Experimental colitis was induced in mice by the administration of 2% (w/v) Dextran sulfate sodium salt (DSS, colitis grade, 36-50kDa, MP Biomedicals) in the drinking water for 7 days followed by normal drinking water w/o DSS. Distal colons were collected two days later.

2023-10-01 | E-MTAB-12655 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data