Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S rDNA sequencing of GC-treated mice

PROVIDER: PRJNA1050586 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27212400.fastq.gz	Fastqsanger.gz
	SRR27212401.fastq.gz	Fastqsanger.gz
	SRR27212402.fastq.gz	Fastqsanger.gz
	SRR27212403.fastq.gz	Fastqsanger.gz
	SRR27212404.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

16S rDNA (v3-v4 region) sequencing of the cecal bacteria in control (CTL) and chronic nonbacterial prostatitis (CNP) rats

Project description:Prostate of SD rats was injected with 0.1 ml 1% carrageenan to induce chronic nonbacterial prostatitis, and the control rats injected with sterile saline. Then, the cecal contents were collected for 16S rDNA sequencing.

2021-07-07 | GSE179639 | GEO

Metaproteomics of colonic microbiota unveils discrete protein functions among colitic mice and control groups

Project description:We utilized the well-characterized murine T cell transfer model of colitis to find specific alterations in the intestinal luminal proteome associated with inflammation. Mass spectrometry proteomic analysis of colonic samples permitted the identification of ~10,000-12,000 unique peptides that corresponded to 5610 protein clusters identified across three groups, including the colitic Rag1 -/- T cell recipients, isogenic Rag1 -/- controls, as well as wild-type mice. Bioinformatic analyses on host and microbial proteins found specific proteins and GO term functionalities unique to each group, as well as GO terms shared across the three cohorts. We further demonstrated that the colitic mice exhibited a significant increase in Proteobacteria and Verrucomicrobia that was substantiated with 16S rDNA sequencing.

2018-07-05 | PXD006384 | Pride

Targeting gut microbiota in Kras wild-type and G12D mutated pancreatic cancer mice

Project description:FastQ files from 16S sequencing of fecal samples from pancreatic cancer xenografted mice not treated (CTRL) and treated with chemotherapy (GEM+nab-PTX), probiotics (PRO) and chemotherapy + probiotics (GEM+nab-PTX+PRO)

2024-09-14 | E-MTAB-12171 | biostudies-arrayexpress

Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients

Project description:The relationship between the microbial changes with clinical-pathological outcomes are still far from being conclusive. Herein, we investigate the ability of metagenomics (MG) and metaproteomics (MP) saliva data in distinguishing C, L0 and L1 patients. For that, we combined two strategies using MG analysis using 16S rDNA sequencing of saliva cells, and MP analysis using liquid chromatography tandem mass spectrometry of saliva supernatant and cells.

2022-11-09 | PXD022859 | Pride

Project description:fecal 16S rDNA of PCOS mice and irisin treated mice

| PRJNA1070831 | ENA

Project description:16s rDNA sequencing of mice

| PRJNA838840 | ENA

mouse gut metagenome strain:C57BL/6

Project description:16s rDNA sequencing of mice

| PRJNA573981 | ENA

16s rDNA-sequencing of gut microbiota in Temozolomide-treated glioma mice

Project description:16s rDNA-sequencing of gut microbiota in Temozolomide-treated glioma mice

| PRJNA718207 | ENA

Mouse caecum vs faeces - Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse

Project description:We compared the microbiota of paired mouse caecal contents and faeces by applying a multi-omic approach, including 16S rDNA sequencing, shotgun metagenomics, and shotgun metaproteomics. The aim of the study was to verify whether faecal samples are a reliable proxy for the mouse colonic luminal microbiota, as well as to identify changes in taxonomy and functional activity between caecal and faecal microbial communities, which have to be carefully considered when using stool as sample for mouse gut microbiota investigations.

2017-03-31 | PXD004911 | Pride

Project description:16s rDNA sequencing of 24w mice

| PRJNA937592 | ENA