Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Sedum endophytic bacterial sequencing data in sterile soil culture experiments

PROVIDER: PRJNA1085113 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28254700_1.fastq.gz	Fastqsanger.gz
	SRR28254700_2.fastq.gz	Fastqsanger.gz
	SRR28254701_1.fastq.gz	Fastqsanger.gz
	SRR28254701_2.fastq.gz	Fastqsanger.gz
	SRR28254662_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Project description:Genome sequencing data of five endophytic bacterial strains from Sedum alfredii

| PRJNA1085268 | ENA

Sugarcane transcriptome - Response to N2-fixing endophytic bacteria association

Project description:Sugarcane plantlets from a variety with high inputs of N obtained from BNF (genotype SP70-1143, CTC, Brazil) free of microorganisms were obtained by sterile meristem culture and micropropagation according to the method of Hendre et al. (1983). In vitro-grown SP70-1143 rooted sugarcane plantlets were inoculated as described by James et al. (1994) with 0.1 ml of 106–107 bacterial suspension. Controls were inoculated with medium only. Endophytic diazotrophic bacteria used were Gluconacetobacter diazotrophicus (PAL5 strain) or a mixture of Herbaspirillum seropedicae (HRC54 strain) and H. rubrisubalbicans (HCC103 strain). All plants were maintained at 30°C with an irradiance of 60 µmol photons m–2 s–1 for 12 h d–1. One day after the inoculation, plant tissues were examined for bacterial colonization by the Most Probable Number (MPN) estimation, according to the methods of Reis et al. (1994) and plantlets were collected and immediately frozen in liquid nitrogen. Five plantlets were polled for each treatment. Extraction of total RNA was performed separately on each sample pool. Keywords: comparison of associations with different endophytic bacterias

2007-05-20 | GSE4970 | GEO

Project description:Sequencing data of sedum endophytic bacteria in Zhejiang Province

| PRJNA1043636 | ENA

Endophytic bacterial community in Sedum alfredii Hance

Project description:Endophytic bacterial community in Sedum alfredii Hance Raw sequence reads

| PRJNA482506 | ENA

Comparison of T cell response to S. aureus and E. coli derived virulence determinants using RNA sequencing

Project description:We aimed to compare transcriptomic changes in T cells in response to sterile bacterial culture supernatants derived from different E.coli and S.aureus strains. Gene expression was analyzed at two different time points.

2023-11-01 | GSE232159 | GEO

Transcription profiling by array of Bacillus amyloliquefaciens FZB42 wildtype and sigD- mutants grown in media supplemented with soil extract

Project description:Bacillus amyloliquefaciens FZB42 is a well-studied Gram-positive plant growth-promoting rhizobacteria. In this work we aim to study the effect of the effect of sigD deletion on the transcriptome of FZB42. The transcritomes were compared by two-color microarray of the sigD- mutant and the wildtype of B. amyloliquefaciens FZB42 grown in 1C medium supplemented with soil extract (SE). This submission includes data from two independent experiments with three biological replicates. Here a biological replicate means the bacterial culture from one flask used for RNA preparation. The samples were collected by two performers. The experiments were varied in sample performer, the date of the experiment.

2017-06-20 | E-MTAB-4876 | biostudies-arrayexpress

SigD vs WT in both SE and RS media

Project description:Bacillus amyloliquefaciens FZB42 is a well-studied Gram-positive plant growth-promoting rhizobacteria. In this work we aim to study the effect of the effect of sigD deletion on the transcriptome of FZB42. The transcritomes were compared by two-color microarray of the sigD- mutant and the wildtype of B. amyloliquefaciens FZB42 grown in 1C medium supplemented with soil extract (SE) and in 1C medium supplemented with both SE and maize root exudates (RE). This submission includes data from three independent experiments with three biological replicates. Here a biological replicate means the bacterial culture from one flask used for RNA preparation. The samples were collected by two performers. The experiments were varied in sample performer, the date of the experiment.

2017-07-05 | E-MTAB-4636 | biostudies-arrayexpress

“Trading virulence forsurvival”:Metabolic pathway switch is a key mechanism for survival of Macrophomina phaseolina upon Burkholderia contaminans challenge

Project description:Macrophominaphaseolina is attributed to infect a wide range of plants. There are not a successful strategies to eradicate the fungus from the soil. In this study, a jute endophytic bacteria, Burkholderiacontaminans has been found to have a promising effect in controlling M. phaseolinain in vitro culture. Using the iTRAQ LC-MS/MS method for quantitative proteomics study, a comparative analysis of the whole proteome of M.phaseolinaunder both Burkholderiachallenged and unchallenged conditions were made and analyzed. A tough battle appears to ensue between the fungus and the bacterium, where Burkholderia manages to arrest the growth of the fungus and decrease its pathogenicity but, the latter apparently survives under ‘hibernating’ conditions by up-regulating its energy metabolism.

2020-02-18 | PXD009121 | Pride

Differential expression of rice root genes upon Rhodotorula treatment

Project description:The experiments were performed to understand the molecular basis of plant growth promotion in rice by Rhodotorula mucilaginosa JGTA-S1, an endophytic yeast from Typha angustifolia.

2019-11-24 | GSE99075 | GEO

Differential expression of Rice genes upon Rhodotorula treatment

2014-12-18 | GSE64321 | GEO