Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Elucidating transcriptional regulation of nitrogen metabolism with systems approaches

ABSTRACT: Elucidating transcriptional regulation of nitrogen metabolism with systems approaches

PROVIDER: PRJNA238009 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1168150.fastq.gz	Fastqsanger.gz
	SRR1168160.fastq.gz	Fastqsanger.gz
	SRR1168170.fastq.gz	Fastqsanger.gz
	SRR1168190_1.fastq.gz	Fastqsanger.gz
	SRR1168190_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]

Project description:Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]

| PRJNA238011 | ENA

Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [RNA-Seq]

Project description:NtrC and Nac have been known to be responsible for responding to nitrogen limitting conditions. In order to elucidate NtrC and Nac regulons in a genome-wide manner, RNA-seq and ChIP-exo experiments were performed for those two transcription factors under 4 different nitrogen sources, ammonia, glutamine, cytidine and cytosine.

2023-01-05 | GSE54904 | GEO

Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]

2023-01-05 | GSE54902 | GEO

Elucidating transcriptional regulation of nitrogen metabolism with systems approaches

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-01-05 | GSE54905 | GEO

Escherichia coli str. K-12 substr. MG1655

Project description:Elucidating transcriptional regulation of nitrogen metabolism with systems approaches [ChIP-Seq]

| PRJNA238007 | ENA

Regulation of nitrogen and carbon metabolism in Aspergillus nidulans.

Project description:In Aspergillus nidulans, nitrogen and carbon metabolism are under the control of wide-domain regulatory systems, including nitrogen metabolite repression, carbon catabolite repression. Transcriptomic analysis of the wild type strain grown under different combinations of carbon and nitrogen regimes was performed, to identify differentially regulated genes. Carbon metabolism predominates as the most important regulatory signal but for many genes, both carbon and nitrogen metabolisms coordinate regulation.

2019-05-15 | GSE115021 | GEO

urea-Urea impact on the nitrogen metabolism of plant and on the nitrogen transport systems

Project description:ra05-09_urea - urea - What are the transcriptomic plant responses to urea nitrogen supply ? - Columbia Arabidopsis ecotype were grown hydroponically on 0.5 mM NH4NO3 as sole nitrogen source during 35 days under short days. Plants were then placed on 3 nutrient solutions supplemented, either with 1 mM NH4NO3, or with 0.5 mM NH4NO3 + 0.5 mM Urea, or with 1 mM Urea. Root and shoot samples were harvested separately 7 days after these different nitrogen treatments Keywords: treated vs untreated comparison

2007-10-16 | GSE9258 | GEO

Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis

Project description:Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis

| PRJNA422118 | ENA

Systems biology approaches reveal low-dose effects of nanoparticles

Project description:Systems biology approaches reveal low-dose effects of nanoparticles

| PRJEB8224 | ENA

Systems biology approaches reveal low-dose effects of nanoparticles

Project description:Here, we show that systems biology approaches can uncover mechanisms underlying cellular responses to nanomaterials. Using RNA Seq, we found that cationic nanoparticles are capable of triggering down-regulation of cell cycle-related genes in primary human bronchial epithelial cells at doses that do not elicit acute cytotoxicity. Bioinformatics analyses implicated NF-kappaB as a putative transcriptional regulator and functional assays confirmed that cationic nanoparticles caused NF-kappaB-dependent cell cycle arrest. Our study demonstrates the feasibility of applying systems biology tools to assess cellular responses to nanomaterials, not least at low doses.

2015-01-17 | E-MTAB-2397 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data