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Scirpophaga incertulas

ABSTRACT: De-novo Transcriptome Sequencing of Yellow Stem Borer, a serious pest of Rice

PROVIDER: PRJNA258113 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR1615982_1.fastq.gz	Fastqsanger.gz
	SRR1615982_2.fastq.gz	Fastqsanger.gz
	SRR1613323_1.fastq.gz	Fastqsanger.gz
	SRR1613323_2.fastq.gz	Fastqsanger.gz
	SRR1615983_1.fastq.gz	Fastqsanger.gz

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Characterization of rice-yellow stem borer interaction

Project description:Yellow stem borer (YSB), Scirpophaga incertulas (Walker) (Lepidoptera: Crambidae), is a major pest of rice in India, that can lead to 20-60% loss in rice production. Effective management of YSB infestation is challenged by the non-availability of adequate source of resistance and poor understanding of resistance mechanisms, thus necessitating studies for generating resources to breed YSB resistant rice and to understand rice-YSB interaction. Here we performed transcritpomics profiling of rice lines with contrasting response to YSB. RNA-sequencing of the susceptible (SM) and tolerant (SM92 lines revealed multiple genes to be differentially regulated upon YSB infestation. Comparative transcriptome analysis revealed a putative candidate gene that was predicted to encode an alpha-amylase inhibitor. Analysis of the transcriptome and metabolite profiles further revealed a possible link between phenylpropanoid metabolism and YSB tolerance.

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