Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epigenetic landscape of HEK cells upon epithelial-to-mesenchymal transition

ABSTRACT: Epigenetic landscape of HEK cells upon epithelial-to-mesenchymal transition

PROVIDER: PRJNA415148 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6194970.fastq.gz	Fastqsanger.gz
	SRR6194980.fastq.gz	Fastqsanger.gz
	SRR6194971.fastq.gz	Fastqsanger.gz
	SRR6194981.fastq.gz	Fastqsanger.gz
	SRR6194962.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Epigenetic landscape of HEK cells upon epithelial-to-mesenchymal transition

Project description:Epithelial-to-mesenchymal transition (EMT) allows progressive loss of epithelial traits and acquisition of mesenchymal identity promoting cell migratory and invasive properties. It is expressed by changes in gene expression program induced by changes of chromatin state and organization. To identify epigenetic landscape associated with EMT we performed chromatin immunoprecipitation (ChIP) experiments allowing nucleosome profiling (H3), distribution of histone modifications linked to actively transcribed (H3K4me3, H3K36me3 and H3K27ac) and repressed (H3K27me3) regions in epithelial (Epi) and mesenchymal (Mes) cells. These cell lines were generated by immortalization of primary HEK cells before and after naturally occured EMT.

2020-10-20 | GSE105422 | GEO

Epithelial to mesenchymal transition shed microvesicle proteome

Project description:Epithelial-mesenchymal transition (EMT) is a highly conserved morphogenic process defined by the loss of epithelial characteristics and the acquisition of a mesenchymal phenotype. EMT is associated with increased aggressiveness, invasiveness, and metastatic potential in carcinoma cells. To assess the contribution of extracellular vesicles following EMT, we conducted a proteomic analysis of shed microvesicles released from Madin-Darby canine kidney (MDCK) cells, and MDCK cells transformed with oncogenic H-Ras (21D1 cells).

2021-03-18 | PXD022290 | Pride

Progesterone inhibits epithelial-to-mesenchymal transition in endometrial cancer

Project description:This SuperSeries is composed of the following subset Series: GSE29435: Progesterone inhibits epithelial-to-mesenchymal transition in endometrial cancer: cell line data GSE29436: Progesterone inhibits epithelial-to-mesenchymal transition in endometrial cancer: patient data Refer to individual Series

2012-01-26 | E-GEOD-29437 | biostudies-arrayexpress

Gene expression profiling of NSCLC cell lines upon TGFb-induced epithelial-mesenchymal transition (EMT)

Project description:Epithelial-mesenchymal transition has been implicated in tumor metastasis, cancer drug resistance and cancer stem cell features. In this study, we examined gene expression profiles of three non-small cell lung cancer cell lines, before and after experimentally induced EMT. We modeled epitheial-mesenchyml transition by culturing A549, HCC827 and NCI-H358 cells in the presence of TGFb for three weeks, and compared gene expression profiles of the paretnal cells and cells after EMT.

2014-11-19 | E-GEOD-49644 | biostudies-arrayexpress

HOTAIR lncRNA role in epithelial-mesenchymal transition

Project description:HOTAIR lncRNA role in epithelial-mesenchymal transition

| PRJNA417082 | ENA

Quantitative phosphoproteomics of epithelial mesenchymal transition of human primary small airway epithelial cells

Project description:A study employs quantitative phosphoproteomics approch for systems biology understanding of epithelial mesenchymal transition of human primary small airway epithelial cells

2018-10-25 | PXD003296 | Pride

Epigenomic reprogramming during epithelial to mesenchymal transition

Project description:This SuperSeries is composed of the following subset Series: GSE27968: DNA methylation data from AML12 cells during EMT GSE28291: Genome-scale epigenetic reprogramming during epithelial to mesenchymal transition Refer to individual Series

2011-07-03 | E-GEOD-28581 | biostudies-arrayexpress

Quantitative phosproteomics of epithelial mesenchymal transition of human primary small airway epithelial cells

Project description:A study employs quantitative phosphoproteomics approach fro systems biology understanding of the epithelial mesenchymal transition of human primary small airway epithelial cells.

2018-10-25 | PXD003297 | Pride

Quantitative proteomics of epithelial mesenchymal transition of human primary small airway epithelial cells part4

Project description:A study employs quantitative proteomics approach fro systems biology understanding of the epithelial mesenchymal transition of human primary small airway epithelial cells.

2018-10-26 | PXD003323 | Pride

CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer

Project description:This SuperSeries is composed of the following subset Series: GSE12811: CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer (expr) GSE12813: CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer (aCGH) Refer to individual Series

2009-09-08 | E-GEOD-12827 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data