Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparative transcriptomics of Toxoplasma gondii and Hammondia hammondi

PROVIDER: PRJNA433890 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6762750.fastq.gz	Fastqsanger.gz
	SRR6762751.fastq.gz	Fastqsanger.gz
	SRR6762752.fastq.gz	Fastqsanger.gz
	SRR6762753.fastq.gz	Fastqsanger.gz
	SRR6762754.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Gene expression analysis of Hammondia hammondi and Toxoplasma gondii sporulated oocysts

2014-10-02 | GSE61963 | GEO

Gene expression analysis of Hammondia hammondi and Toxoplasma gondii sporulated oocysts

Project description:To date little is known about the transcriptome of Hammondia hammondi, the nearest extant relative of Toxoplasma gondii. In this study we used an existing microarray to query Toxoplasma gondii and Hammondia hammondi transcript abundance in sporulated oocysts. Oocysts of the VEG strain of Toxoplasma gondii, and the HhCatGer041 strain of Hammondia hammondi, were isolated from cat feces by sucrose flotation, and sporulated for ~3-6 months in 2% sulfuric acid. RNA was isolated from Bleach-treated oocyst preparations using the Trizol reagent. RNA was biotinylated for hybridization to Toxo 169 Affymetrix chips using the Illumina Total Prep RNA labeling kit (Ambion). For each species 3 separate RNA isolations were performed on the same batch of oocysts and hybridized to individual microarrays.

2014-10-02 | E-GEOD-61963 | biostudies-arrayexpress

Gene expression analysis of Hammondia hammondi and Toxoplasma gondii sporulated oocysts

Project description:Gene expression analysis of Hammondia hammondi and Toxoplasma gondii sporulated oocysts

| PRJNA262816 | ENA

Hammondia hammondi

Project description:Hammondia hammondi overview

| PRJNA80851 | ENA

Toxoplasma gondii RNASeq

Project description:Recent advances in high throughput sequencing methodologies allow the opportunity to probe in depth the transcriptomes of organisms including N. caninum and Toxoplasma gondii. In this project, we are using Illumina sequencing technology to analyze the transcriptome (RNA-Seq) of experimentally accessible stages (e.g. tachyzoites at different times points) of T. gondii VEG strain. The aim is to make comparative transcriptional landscape maps of Neospora and Toxoplasma at different time points at different life cycle stages and compare levels of expression of orthologous genes in these two organisms.

2011-02-08 | E-MTAB-550 | biostudies-arrayexpress

Hammondia hammondi strain:HhCatGer041

Project description:Hammondia hammondi strain:HhCatGer041 Genome sequencing and assembly

| PRJNA191036 | ENA

Transcriptomics of Toxoplasma gondii sporulating oocysts

Project description:Transcriptomics of Toxoplasma gondii sporulating oocysts

| PRJNA850353 | ENA

Transcriptomics of Toxoplasma gondii enteroepithelial stages

Project description:Transcriptomics of Toxoplasma gondii enteroepithelial stages

| PRJNA428456 | ENA

Expression QTL mapping of Toxoplasma gondii genes

Project description:This SuperSeries is composed of the following subset Series: GSE11437: Expression QTL mapping of Toxoplasma gondii genes, Bradyzoite array GSE11514: Expression QTL mapping of Toxoplasma gondii genes, Tachyzoite array Keywords: SuperSeries Refer to individual Series

2008-05-22 | E-GEOD-11515 | biostudies-arrayexpress

Hammondia hammondi strain:H.H.34

Project description:Hammondia hammondi strain:H.H.34 Genome sequencing and assembly

| PRJNA80807 | ENA