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Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (mRNA-seq)

ABSTRACT: Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (mRNA-seq)

PROVIDER: PRJNA542164 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR9036800_1.fastq.gz	Fastqsanger.gz
	SRR9036800_2.fastq.gz	Fastqsanger.gz
	SRR9036810_1.fastq.gz	Fastqsanger.gz
	SRR9036810_2.fastq.gz	Fastqsanger.gz
	SRR9036801_1.fastq.gz	Fastqsanger.gz

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Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery

Project description:Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery

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Project description:Using Illumina’s high-throughput small RNA sequencing and RNA sequencing, miRNAs and mRNAs differentially expressed under Zn deficiency and Zn resupply conditions were identified in shoots and roots of rice seedlings. A total of 68 miRNAs were identified to be differentially expressed under Zn deficiency and/or Zn resupply, and 38 of them were novel miRNAs. The Zn-responsive miRNAs were predicted to target a total of 799 genes. The transcriptome sequencing identified a total of 360 differentially expressed genes (DEGs) under Zn deficiency in shoots and roots, and 97 of them were recovered after Zn resupply treatment. Twelve DEGs were found to be potential targets genes of several Zn-responsive miRNAs like miR171g-5p, miR397b-5p, miR398a-5p, and miR528-5p.

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Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery

Project description:This SuperSeries is composed of the SubSeries listed below.

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