Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crossfeeding relationship between Ruminococcus gauvreauii IPLA60001 and Ruminocoides biliarensis IPLA60002

ABSTRACT: Crossfeeding relationship between Ruminococcus gauvreauii IPLA60001 and Ruminocoides biliarensis IPLA60002

PROVIDER: PRJNA591206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Crossfeeding relationship between Ruminococcus gauvreauii IPLA60001 and Ruminocoides biliarensis IPLA60002

Project description:Little is known about the bacteria that reside in human gallbladder and the mechanisms that allow them to survive within this harsh environmental niche. Furthermore, certain bacterial species are considered to exhibit antagonistic activities whilst others may form mutualistic interactions through, for example, cross-feeding. We isolated two new strains from healthy human bile samples, one belonging to Ruminococcus gauvreauii, of Lachnospiraceae family, and other constituting a new specie in Ruminococcaceae family, named Ruminocoides biliarensis. The two strains differed markedly in their carbohydrate metabolism as R. gauvreauii mainly metabolised sugar alcohols, including inositol, to form acetate as unique fermentation product, and Rc. biliarensis mainly metabolised resistant starches to mainly form formate and acetate as fermentation end products. Both strains exhibited resistance to different bile salts, and the ability to sporulate. Amino acid and vitamin biosynthesis profiles also markedly differed between the two bile isolates. Finally,RNAseq was used to analyse the co-cultures of both isolates, to analyze the activities involved in the possible cross-feeding relationship.

2022-07-05 | GSE140753 | GEO

Ruminococcus gauvreauii

Project description:Ruminococcus gauvreauii overview

| PRJNA189138 | ENA

Ruminococcus gauvreauii DSM 19829

Project description:Ruminococcus gauvreauii DSM 19829

| PRJNA188897 | ENA

Effect of agarooligosaccharide on gene expression of Ruminococcus gnavus

Project description:We performed a transcriptome analysis of Ruminococcus gnavus with and without 0.1% (w/w) agarooligosaccharide exposure to validate the mechanism of growth inhibition.

2023-12-31 | GSE243872 | GEO

Expression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose

Project description:This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bacterium to degrade plant cell wall polysaccharides. Identifying the major enzyme types involved in plant cell wall degradation is essential for gaining a better understanding of the cellulolytic capabilities of this organism as well as highlighting potential enzymes for application to improvement of livestock nutrition and for conversion of cellulosic biomass to liquid fuels. These results show that the growth substrate drives expression of enzymes predicted to be involved in carbohydrate metabolism as well as expression and assembly of key cellulosomal enzyme components. 1 species (Ruminococcus flavefaciens FD_1), 2 conditions (cellulose, cellobiose), 4 biological replicates. Direct design with biological dye swap.

2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress

Relationship between sex and disease resistance of Penaeus vannamei

Project description:Relationship between sex and disease resistance of Penaeus vannamei

| PRJNA1064882 | ENA

Project description:Ruminococcus gauvreauii IPLA60001 whole genome shotgun

| PRJNA577405 | ENA

Ruminococcus

Project description:Ruminococcus Raw sequence reads

| PRJNA587333 | ENA

Relationship between taste perception and oral microbiota composition

Project description:New insights into the relationship between taste perception and oral microbiota composition

| PRJEB28769 | ENA

Ruminococcus gauvreauii TS7.3-1.1

Project description:Strain Ruminococcus gauvreauii TS7.3-1.1 (species Ruminococcus gauvreauii) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3468 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data