Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Creatine utilization as a sole nitrogen source in Pseudomonas putida KT2440 is transcriptionally regulated by CahR

ABSTRACT: Creatine utilization as a sole nitrogen source in Pseudomonas putida KT2440 is transcriptionally regulated by CahR

PROVIDER: PRJNA685803 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13260968.fastq.gz	Fastqsanger.gz
	SRR13260969.fastq.gz	Fastqsanger.gz
	SRR13260970.fastq.gz	Fastqsanger.gz
	SRR13260971.fastq.gz	Fastqsanger.gz
	SRR13260972.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Creatine utilization as a sole nitrogen source in Pseudomonas putida KT2440 is transcriptionally regulated by CahR

Project description:creatine regulon is small and electrophoretic mobility shift demonstrates specific CahR binding only at the creA promoter suggesting much of the regulon is due to induction by downstream products. This study identifies ligand specificity and provides biological function to a previously uncharacterized GATR, contributing to our understanding of bacterial organic nitrogen compound metabolism.

2020-12-17 | GSE163362 | GEO

Transcriptional network between pCAR1 and KT2440 chromosome

Project description:The completely sequenced catabolic plasmid pCAR1 of Pseudomonas resinovorans CA10 confers the ability to degrade carbazole upon the recipient strain Pseudomonas putida KT2440. To study the coordinated expression of pCAR1 with its host chromosome, transcriptome of the transconjugant strain KT2440(pCAR1) was analyzed at growth with carbazole as the sole carbon source compared to succinate as an alternative carbon source. Next, horizontal gene transfer of a plasmid potentially alters the transcriptome of its host chromosome. Transcriptome of the transconjugant strain KT2440(pCAR1) was compared to the parental strain KT2440 at the same growth conditions. Furthermore, pCAR1 encodes a possible global regulator designated ORF70, which belongs to the MvaT family of H-NS-like nucleoid-associated proteins in Pseudomonas. To investigate the regulon under the control of ORF70, transcriptome of KT2440(pCAR1deltaORF70) was compared to the parental strain KT2440(pCAR1) at the same growth conditions. Keywords: Comparative transcriptome analysis

2007-05-01 | GSE7650 | GEO

Expression profile of Pseudomonas putida KT2440 growing in myristic acid

Project description:We report the application of a high-throughput technique, RNA-seq, to study the transcriptomic pattern of P. putida KT2440 cultures using myristic acid as the sole carbon source at the exponential phase of growth compared with cultures grown with glucose as the sole carbon source. Thus, we can explore the expression of genes involved in fatty acid degradation.

2018-12-31 | GSE116756 | GEO

KT2440 wt vs. mut agmR -M9 plus glucose chloramphenicol-free medium

Project description:DNA microarrays were carried out to compare the transcriptional profiles of P. putida KT2440 and its isogenic knock-out mutant in agmR gene (mut agmR) when grown in M9 medium with glucose as a sole carbon source and in absense of chloramphenicol or any other stressor compound.

2011-12-01 | E-MEXP-3203 | biostudies-arrayexpress

Transcriptomic analysis of Alishewanella species utilizing pectin as a sole carbon source

Project description:Comparative transcriptomic analysis of three Alishewanella species utilizing pectin as a sole carbon source

2013-03-29 | GSE45511 | GEO

Aspergillus nidulans ∆pkaA strain grown on avicel as sole carbon source

Project description:Transcriptome of A. nidulans ∆pkaA strain when grown on complete media (CM) and transferred to minimal media plus avicel as a sole carbon source for 8 and 24 hours

2015-07-15 | GSE70917 | GEO

Aspergillus nidulans strains TNO2a3, ∆snfA and ∆schA grown on avicel as sole carbon source

Project description:Transcriptome of A. nidulans TNO2a3, ∆snfA and ∆schA strains when grown on complete media (CM) and transferred to minimal media plus avicel as a sole carbon source for 8 and 24 hours.

2013-07-16 | GSE47810 | GEO

KT2440 vs. KT2440 _NAH7 Naphthalene

Project description:Plasmid-free Pseudomonas putida KT2440 compared with the same strain harbouring NAH7 plasmid; all the cells were grown in minimal medium (M9 with glucose) saturated with naphthalene.

2012-07-27 | E-MEXP-3411 | biostudies-arrayexpress

Metabolic reprogramming of macrophage polarization by creatine [ATAC-seq]

Project description:We found that the creatine metabolic pathway was differentially regulated under M1 versus M2 polarizing conditions. In return, creatine could suppress M1 by blocking STAT1 tyrosine phosphorylation while promote M2 by sustaining chromatin accessibility of specific gene loci.

2019-08-06 | GSE110403 | GEO

Metabolic reprogramming of macrophage polarization by creatine [RNA-seq]

2019-08-06 | GSE110395 | GEO