Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nuclear and cytoplasmic whole transcriptome RNA-sequencing of mouse endothelial cell line and mmu-miR-466c knock-down cell line

ABSTRACT: Nuclear and cytoplasmic whole transcriptome RNA-sequencing of mouse endothelial cell line and mmu-miR-466c knock-down cell line

PROVIDER: PRJNA730029 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14551535_1.fastq.gz	Fastqsanger.gz
	SRR14551535_2.fastq.gz	Fastqsanger.gz
	SRR14551536_1.fastq.gz	Fastqsanger.gz
	SRR14551536_2.fastq.gz	Fastqsanger.gz
	SRR14551537_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

Nuclear and cytoplasmic whole transcriptome RNA-sequencing of mouse endothelial cell line and mmu-miR-466c knock-down cell line

Project description:To analyze the role of miR-466c in the regulation in hypoxic response, we used CRISPR-mediated gene editing to remove 97 bp region from the Sfmbt2 intron 10 which contains the miR-466c hairpin. We performed whole transcriptome RNA-sequencing of the parental mouse endothelial cell line C166 and the mmu-miR-466c knock-down cell line.

2022-03-16 | GSE174483 | GEO

Expression data from knock-down ES stable cell line

Project description:In order to identify the effects of the knock-down of the gene of interest on the mouse ES transcriptome, we performed Affymetrix Gene-Chip hybridization experiments for the knock-down cell line. Transcriptome analysis of the knock-down transgenic mouse ES cell line. The knock-down cell line (shE13) was generated by stably expressing a specific short-hairpin RNA against E13 sequence thus knocking-down E13 expression in parental mouse ES cell line E14Tg2a.4 (E14, Hooper M et al., 1987). The specific mouse gene knocked down in the ES cell line is E130012A19Rik.

2012-12-13 | GSE31165 | GEO

CRISPR/Cas9 knock down line

Project description:CRISPR/Cas9 knock down line

| PRJNA521684 | ENA

NFATC2 knock-down on melanoma cell line A375

Project description:RNA-seq on NFATC2 knock-down (siRNA) on melanoma cell line A375

2017-09-29 | GSE99466 | GEO

RNA-seq of AGO2 knock-down HeLaS3 cell line

Project description:RNA-seq of AGO2 knock-down HeLaS3 cell line

| PRJEB5044 | ENA

EWS siRNA knock-down in HeLa cell line

Project description:HeLa cell line was trasfected by a EWS siRNA oligo causing knock-down of EWS or a siRNA scrambled oligo

2011-09-20 | GSE22929 | GEO

mmu-miR-15a-3p activity in mouse cells

Project description:We intended to investigate effects of mmu-miR-15a-3p on gene expression in mice We used microarrays to compare gene expression in mouse B/CMBA.Ov cell lines transfected with mmu-miR-15a-3p and negative control mimic

2013-01-01 | E-GEOD-42797 | biostudies-arrayexpress

Effect of mmu-miR-193b-3p and miR-365a-3p ectopic expression on the transcriptome of mouse cutaneous Squamous Cell Carcinoma cells

Project description:The mouse mSCC-20 cell line was transfected with 5nM of mmu-pre-miR-193b-3p, pre-miR-365a-3p or pre-miR-NC1. Total RNAs were extracted 30 h after transfection and hybridized on microarrays.

2014-02-03 | GSE52381 | GEO

TYRP1 knock-down in human melanoma cell line (501Mel)

Project description:Efficient TYRP1 knock-down (KD) have been performed in human melanoma cell line expressing a high level of TYRP1 mRNA and protein in order to identify the molecular pathway explaining the decrease of cell proliferation in TYRP1 KD cells.

2017-07-01 | GSE70561 | GEO

RNAi knock down of dU2AF50 in Drosophila mel2 cells and profiling of nuclear and cytoplasmic fractions

Project description:Nuclear and cytoplasmic RNA were extracted by hypotonic cell lysis from D.-mel2 cell knock down by RNAi against dU2AF50 or with non-specific dsRNA.

2007-07-05 | E-GEOD-1344 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data