Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: BIOS-SCOPE cast profile amplicon data

PROVIDER: PRJNA769790 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR16297300_1.fastq.gz	Fastqsanger.gz
	SRR16297300_2.fastq.gz	Fastqsanger.gz
	SRR16297400_1.fastq.gz	Fastqsanger.gz
	SRR16297400_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 779

Similar Datasets

marine metagenome

Project description:Viral metagenomes from the Sargasso Sea (BIOS-SCOPE cruise AE1712)

| PRJNA767318 | ENA

Project description:SCOPE-PARAGON I nifH amplicon

| PRJNA1009239 | ENA

Project description:BIOS-SCOPE Size-fractionated microbial communities in the upper 500m at the Bermuda Atlantic Time Series

| PRJNA1066814 | ENA

Affymetrix SNP array data for ovarian cancer cells OVCAR-3 and FU-OV-1

Project description:A subset of ovarian cancer are characterized by 19q12 amplification. To perform funtional studies of this amplicon the profile has been determined by SNP analysis.

2010-12-24 | GSE26301 | GEO

Project description:16S amplicon sequencing data (V3-V4) of soil, earthworm gut content and earthworm cast

| PRJNA1063260 | ENA

Defining principles of gene and regulatory element imprinting in mouse trophoblast stem cells

Project description:An undefined number of mammalian genes are expressed preferentially from one parental allele, in a process termed genomic imprinting. To shed light on the general principles of this process in a single cell type, we profiled allelic gene expression, DNaseI hypersensitivity (DHS), and CTCF binding in genetically defined murine trophoblast stem cells (TSCs). The data deposited in this entry are from CTCF ChIP-Seq and DNase-Seq experiments performed in the BC.1 cell line. All other data has been previously deposited as part of GEO Series GSE39406. The F1 TSC line profiled was generated from a cross between a C57BL/6J (B6) female and CAST/EiJ (Cast) male mouse.

2016-07-03 | E-GEOD-51610 | biostudies-arrayexpress

H3K4me3 ChIP-seq from B6CASTF1-PRDM9 Humanized/CAST testes

Project description:We report testis H3K4me3 enrichment in an F1 male from a C57BL/6J (B6) x CAST/Eij (CAST) cross (B6 mother, CAST father). This mouse is heterozygous at PRDM9 for a humanized allele (Davies et al. Nature 2016) and the CAST allele. After filtering of promoter H3K4me3 regions, these data serve as a measure of PRDM9 binding enrichment on each homologue. We found that both crossovers and non-crossovers (observed by sequencing F2/F4/F5 genomic DNA) are depleted at "asymmetric" Double-Strand Break hotspots where PRDM9 primarily binds only one of the two homologues. This proves that PRDM9 plays an important role in promoting inter-homologue interactions and can explain why increasing PRDM9 binding asymmetry predicts hybrid infertility. See Li, Bitoun, Altemose et al. 2018 (pending) for a complete summary.

2018-09-28 | GSE119727 | GEO

Project description:Universal Amplicon Sequences (mixed 16S/18S) from SCOPE Gradients 4 Cruise

| PRJNA1079727 | ENA

Mus musculus

Project description:CAST/EiJ x C57BL/6J cross data

| PRJNA117247 | ENA

CRISPR RNA-seq from K562 (ENCSR159HPD)

Project description:RNA-seq on K562 cells treated with a CRISPR gRNA against CAST. (CAST-BGKcLV26) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

2022-12-04 | GSE219526 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data