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ABSTRACT: Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1

PROVIDER: PRJNA776884 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	SRR25748123_subreads.fastq.gz	Fastqsanger.gz
	SRR25748124_subreads.fastq.gz	Fastqsanger.gz
	SRR25748125_subreads.fastq.gz	Fastqsanger.gz
	SRR25748126_subreads.fastq.gz	Fastqsanger.gz

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Project description:Jaculus jaculus (Lesser Egyptian jerboa) genome, mJacJac1, sequence data

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Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus

Project description:Muscle is a highly adaptable tissue capable of undergoing environmentally-induced changes and remarkable evolutionary adaptations. Muscle atrophy, a common feature in various myopathies as well as other conditions like cancer and diabetes, has been studied at the transcriptomic level, uncovering shared molecular factors. The lesser Egyptian jerboa, adapted for bipedal locomotion in a desert environment, experiences natural muscle loss in its foot. Cellular characterization of this process revealed similarities with human skeletal muscle atrophy, such as the loss of Desmin and upregulation of the ubiquitin proteasome pathway. By using RNA-sequencing, gene candidates associated with muscle loss in jerboa were identified, and genome-wide comparisons with established mouse models of muscle dystrophy/atrophy elucidated shared molecular signatures. These findings provide valuable insights into the genes and pathways involved in natural muscle loss and contribute to understanding the evolutionary relationship between natural and pathological muscle loss.

2024-09-01 | GSE235932 | GEO

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Project description:The lesser Egyptian jerboa is a small rodent adapted to desert and semi-arid habitats

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Project description:Gene expression differences associated with intrinsic hindfoot muscle loss in the jerboa, Jaculus jaculus

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Jaculus jaculus strain:Lab Born/Non-Inbred

Project description:Jaculus jaculus Genome Sequencing

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Renal transcriptome of the desert adapted Jaculus jaculus during water restriction and rehydration

Project description:Jaculus jaculus were split into three experimental groups: control (water access ad libitum), dehydrated (11 days water restriction), and rehydrated (7 days water restriction followed by 3 days water ad libitum). Kidney samples were extracted and sequenced to investigate changes in gene expression during osmotic challenge in a desert adapted model.

2023-07-04 | GSE225470 | GEO

Project description:Jerboa Cartilage RNASeq_SR50_Reads

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Different Egyptian rousette interferon omega proteins elicit an overlapping but not identical transcriptional response in bat cells.

Project description:Abstract from accompanying publication: "Bats host a number of viruses that cause severe disease in humans without experiencing overt symptoms of disease themselves. While the mechanisms underlying this ability to avoid sickness are not known, deep sequencing studies of bat genomes have uncovered genetic adaptations that may have functional importance in the antiviral response of these animals. Egyptian rousette bats (Rousettus aegyptiacus) are the natural reservoir hosts of Marburg virus (MARV). In contrast to humans, these bats do not become sick when infected with MARV. A striking difference to the human genome is that Egyptian rousettes have an expanded repertoire of IFNW genes. To probe the biological implications of this expansion, we synthesized IFN-ω4 and IFN-ω9 proteins and tested their antiviral activity in Egyptian rousette cells. Both IFN-ω4 and IFN-ω9 showed antiviral activity against RNA viruses, including MARV, with IFN-ω9 being more efficient than IFN-ω4. Using RNA-Seq, we examined the transcriptional response induced by each protein. Although the sets of genes induced by the two IFNs were largely overlapping, IFN-ω9 induced a more rapid and intense response than did IFN-ω4. About 13% of genes induced by IFN-ω treatment are not found in the Interferome or other ISG databases, indicating that they may be uniquely IFN-responsive in this bat."

2020-03-16 | GSE145761 | GEO

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