Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Fermented Grated Cassava Metagenome

PROVIDER: PRJNA811804 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18190520_1.fastq.gz	Fastqsanger.gz
	SRR18190520_2.fastq.gz	Fastqsanger.gz
	SRR18190521_1.fastq.gz	Fastqsanger.gz
	SRR18190521_2.fastq.gz	Fastqsanger.gz
	SRR18190522_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Fermented grated cassava

Project description:Fermented Grated Cassava Metagenome

| PRJNA811179 | ENA

Project description:Cassava residue or fermented cassava residue on piglets health

| PRJNA793624 | ENA

Lactiplantibacillus plantarum strain:Growol (Indonesian fermented cassava) | isolate:Growol (Indonesian fermented cassava)

Project description:Lactiplantibacillus plantarum strain:Growol (Indonesian fermented cassava) | isolate:Growol (Indonesian fermented cassava) Genome sequencing

| PRJNA826210 | ENA

Project description:Metagenomic sequencing data of naturally fermented cassava leaves

| PRJNA1064010 | ENA

Large-scale proteome characterization of the cassava root

Project description:Cassava is the most important root crop in the tropics but rapid post-harvest physiological root deterioration (PPD) is a major constraint to commercial cassava production. We used label-free quantitative proteomics to generate an extensive cassava root and PPD proteome. Over 2400 unique proteins were identified in the cassava root and nearly 300 proteins showed significant abundance regulation during PPD. A candidate gene for reducing PPD was identified from the regulated proteins with enzymatic assays and afterwards verified with a transgene approach. This demonstrates the relevance of proteomics approach for crop improvements.

2014-06-03 | PXD000587 | Pride

Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease

Project description:Analysis of transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease transcriptome analysis of two varieties of cassava that differ in their level of resistance to cassava brown streak virus.

2014-04-03 | E-GEOD-56467 | biostudies-arrayexpress

Cassava sRNA libraries from non-infected and infected tissues with Xanthomonas axonopodis. pv manihotis

Project description:microRNAs can play a crucial role in stress response in plants, including biotic stress. Some miRNAs are known to respond to bacterial infection. This work has addressed the role of miRNAs in Manihot esculenta (cassava)-Xanthomonas axonopodis pv. manihotis (Xam) interaction. Illumina sequencing was used for analyzing small RNA libraries from cassava tissue infected and non-infected with Xam. Cassava variety MBRA685 (resistant to Xam-CIO151) Six-week-old plants were inoculated with 36h-old cultures of the aggressive Xanthomonas axonopodis pv. manihotis strain CIO151 in both leaves and stems.

2011-12-01 | GSE29379 | GEO

Transcriptome analysis of response to infection of cassava anthracnose disease (CAD) using an oligo-DNA microarray from cassava

Project description:Cassava Anthracnose Disease (CAD) that caused by the fungus Colletotorichum anthracnose is a serious disease of cassava in worldwide. In this study, we aim to establish the cassava oligo-DNA microarray representing approximately 30,000 cassava genes and apply it to investigate the molecular mechanisms against fungal infection using two cassava cultivars; Huay Bong 60 (HB60, resistant line for CAD) and Hanatee (HN, sensitive line for CAD). Based on expression profiling, we showed that the expression of various biotic stress-inducible genes, such as detoxification enzyme related genes is higher in HB60 under the treated conditions and non-treated condition, compared with HN. These results show that stress-inducible signaling pathways including ROS detoxification are constitutively activated in HB60 even under normal growth conditions without stress. These results suggest that our microarray is a useful tool for analyzing the cassava transcriptome and add new insight into the host responses of cassava against fungal infection.

2016-12-31 | GSE63223 | GEO

Development of a high-density oligo microarray of cassava, an important tropical crop

Project description:We developed a 60-mer oligonucleotide Agilent microarray representing about 20,000 cassava genes and applied it to expression profiling under drought stress. We demonstrated that our microarray is an useful tool for analyzing the cassava transcriptome and that it can be applied to various cassava species.

2012-06-15 | GSE31749 | GEO

Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease

Project description:Analysis of transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease

2014-04-03 | GSE56467 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data