Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mango

ABSTRACT: Sequencing, chloroplast genome and nuclear gene sequences assembly of wild and domesticated mango

PROVIDER: PRJNA940204 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23794763_1.fastq.gz	Fastqsanger.gz
	SRR23794763_2.fastq.gz	Fastqsanger.gz
	SRR23824304_1.fastq.gz	Fastqsanger.gz
	SRR23824304_2.fastq.gz	Fastqsanger.gz
	SRR23814909_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Putative Allergens Identified in Mango (Mangifera indica Linn) leaf and fruit with transcriptome analysis

Project description:Purpose: this study provided a comprehensive sequence for a systemic view of the transcriptome between mango leaf and fruit, as well as fruit allergens, which will be useful for further genomic research studies and breeding of lower allergenic mango cultivars. Methods:Some allergens have previously been identified in mango (Mangifera indica Linn), including profilins, Bet v 1-like proteins and chitinase. In this paper, 66 potential allergen genes were identified and their relative expressions evaluated in mango fruit and leaf using Illumina RNA-Seq technology. Results:A total of 17.63Gb Clean Data was obtained.The number of %≥Q30 was above 94.58%.RNA-Seq generated 11,751,123 contigs that were assembled into 99,328 unigenes with 16,848 unigenes of >1000 bp. A total of 230,242 unigenes were annotated using public protein databases, with a cut-off E-value above 10−5, of which 27,295, 46,030, 24,227 and 14,023 unigenes were assigned to gene ontology terms, Nr, Swiss-Prot and clusters of orthologous groups, respectively. Allergens mainly belonged to pollen allergen, pathogenesis-related protein Bet v I family and NADPH-dependent FMN reductase.

2020-12-01 | GSE142427 | GEO

Anthracothorax mango

Project description:Anthracothorax mango

| PRJNA919800 | ENA

Sapajus apella isolate:Mango

Project description:Sapajus apella isolate:Mango Genome sequencing and assembly

| PRJNA717806 | ENA

XLinkProphet Mango XL-MS - 9 Standard Protein Shotgun, ReACT, and Mango Search Results

Project description:9 Standard Protein Shotgun, ReACT, and Mango Search Results

2019-03-13 | PXD008951 | Pride

Mango transcriptome

Project description:454 sequencing of mango cultivar 'Keitt' RNA

| PRJEB6784 | ENA

Mango-EcoliBDP - Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification

Project description:Dataset presented in Mango manuscript. Contains Ecoli cross-linked with BDP-NHP. Demonstration of whole proteome in-vivo cross-linking without an instrument capable of serial fragmentation.

2019-02-25 | PXD008975 | Pride

mango leaf compost metagenome

Project description:mango leaf compost metagenome Metagenome

| PRJNA589949 | ENA

Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits

Project description:Transcriptome and Proteomic Analysis of Mango (Mangifera indica Linn) Fruits

2015-02-20 | PXD000808 | Pride

Lysinibacillus mangiferihumi strain:Mango 05

Project description:Lysinibacillus mangiferihumi strain:Mango 05 Genome sequencing

| PRJNA782811 | ENA

Coordination of nuclear and plastid transcription for chloroplast biogenesis requires H4 acetylation by the NuA4 complex

Project description:Chloroplast biogenesis represents a crucial step in seedling development, and is essential for the transition to autotrophic growth in plants. This light-controlled process relies on the transcription of nuclear and plastid genomes that drives the effective assembly and regulation of the photosynthetic machinery. Here we reveal a novel regulation level for this process by showing the involvement of chromatin remodelling in the coordination of nuclear and plastid gene expression for proper chloroplast biogenesis and function. The two Arabidopsis homologs of the yeast EPL1 proteins, core components of the NuA4 histone acetyl-transferase complex, are essential for the correct assembly and performance of chloroplasts. EPL1 proteins are necessary for the coordinated expression of nuclear genes encoding most of the components of chloroplast transcriptional machinery, specifically promoting H4K5Ac deposition in these loci. These data unveil a key participation of epigenetic regulatory mechanisms in the coordinated expression of the nuclear and plastid genomes.

2022-07-26 | GSE180614 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data