Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Porcine parvovirus

ABSTRACT: Porcine parvovirus Genome sequencing and assembly

PROVIDER: PRJNA955118 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24166688.fastq.gz	Fastqsanger.gz
	SRR24166688_1.fastq.gz	Fastqsanger.gz
	SRR24166688_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Porcine parvovirus 7 isolate:porcine parvovirus 7 | breed:7

Project description:Porcine parvovirus 7 isolate:porcine parvovirus 7 | breed:7 Genome sequencing and assembly

| PRJNA807752 | ENA

Porcine parvovirus 7 isolate:porcine parvovirus 7 | breed:7

Project description:Porcine parvovirus 7 isolate:porcine parvovirus 7 | breed:7 Genome sequencing and assembly

| PRJNA807879 | ENA

Porcine parvovirus strain:SC2017

Project description:Porcine parvovirus strain:SC2017 Genome sequencing

| PRJNA392228 | ENA

Porcine parvovirus 1 strain:CH/HN-3/2021 | isolate:Lung tissue | breed:swine

Project description:Porcine parvovirus 1 strain:CH/HN-3/2021 | isolate:Aborted fetus | breed:Porcine | Genome sequencing and assembly

| PRJNA745036 | ENA

High concordance between SNPs identified by the porcine 60K BeadChip genotyping array (Illumina) and the assembly-versus-assembly method

2016-07-05 | GSE83910 | GEO

Copy number variation in the porcine genome

Project description:Copy number variations (CNVs), which represent a significant source of genetic diversity in mammals, are currently being associated with phenotypes of clinical relevance, mostly in humans and mice. Notwithstanding, little is known about the extent of CNV that contributes to genetic variation in farm animals, including pig. This Nimblegen experiment reports a genome-wide high resolution map of copy number variation in the porcine genome. After remapping the initial CNV sequences to the latest genome assembly (Sus scrofa v.9), 84 CNV regions (CNVRs) were identified among the genomes of 21 related porcine samples from Duroc breed. We used a set of NimbleGen CGH arrays that tile across the assayable portion of the pig genome with approximately 2.1 million probes, at a 502 bp average probe spacing (Sus scrofa pre assembly version 6). These CNVRs covered 2 Mb of the genome, and ranged in size from 4 to 352 kb (median size of 12 kb). Together, this analysis provides a useful resource to assist with the assessment of CNVs in the contexts of porcine variation, health and productive efficiency.

2010-05-01 | GSE19047 | GEO

High concordance between SNPs identified by the porcine 60K BeadChip genotyping array (Illumina) and the assembly-versus-assembly method

Project description:Porcine 60K BeadChip genotyping arrays (Illumina) are increasingly being applied in pig genomics to validate SNPs identified by re-sequencing or assembly-versus-assembly method. Here we report that more than 98% SNPs identified from the porcine 60K BeadChip genotyping array (Illumina) were consistent with the SNPs identified from the assembly-based method. This result demonstrates that whole-genome de novo assembly is a reliable approach to deriving accurate maps of SNPs. To compare SNPs identified by genotyping arrays and de novo assembly method, we genotyped 10 pig breeds by porcine 60K BeadChip genotyping array (Illumina), including 1 berkshire pig, 1 hampshire pig, 1 landrace pig, 1 large white pig,1 piÃ©train pig, 1 bamei pig,1 jinhua pig, 1 meishan pig, 1 rongchang pig and 1 Tibetan wild boar.

2016-07-05 | E-GEOD-83910 | biostudies-arrayexpress

An atypical parvovirus driving chronic tubulointerstitial nephropathy and kidney fibrosis

Project description:We have performed RNA sequencing on kidneys from inclusion body nephropathy-affected mice and compared the data to healthy, uninfected controls. Using a metagenomics approach, we report the identification of the disease causing agent as an atypical virus, mouse kidney parvovirus (MKPV), belonging to a divergent genus of the Parvoviridae. The RNA sequencing also enabled us to assess the host response to MKPV-infection.

2018-07-27 | GSE117710 | GEO

Copy number variation in the porcine genome

2010-04-30 | E-GEOD-19047 | biostudies-arrayexpress

Human parvovirus

Project description:Human parvovirus viral integrations into human cell types

| PRJNA208398 | ENA