Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

59 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling by array of Candida albicans biofilm (at 24, 32 and 40h growth) and planktonic culture to study the role of Tye7p

ABSTRACT: Role of transcription factor Tye7p in condition of biofilm (at 24, 32 and 40h growth) and planktonic culture for the yeast Candida albicans

ORGANISM(S): Candida albicans

SUBMITTER: Julie Bonhomme

PROVIDER: E-MEXP-2604 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Candida albicans biofilm exposed to amphotericin B, fluconazole or two concentrations of caspofungin

Project description:30h of growth biofilms in microfermentors were exposed to caspofungin 0.5 µg/ml, caspofungin 5 µg/ml, fluconazole 80 µg/ml or amphotericin B 8 µg/ml. Control and antifungal-exposed biofilms were recovered at t= 0, 30, 60 and 120 min post exposure to antifungal.

2010-03-02 | E-MEXP-2436 | biostudies-arrayexpress

ApoEdpL-W treatment

Project description:We performed a gene expression analysis of C. albicans SC5314 planktonic cells exposed to the antifungal peptide ApoEdpL-W. Exponentially-growing C. albicans SC5314 cells in SD at 30°C medium were exposed to 2.5 µM ApoEdpL-W and samples were collected after 10 and 30 min. for transcript profiling

2011-04-01 | E-MEXP-3084 | biostudies-arrayexpress

Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae

Project description:To investigate the possible range of additional RNase P substrates in vivo a strand-specific, high-density microarray was used to analyze what RNA accumulates with a mutation in the catalytic RNA subunit of nuclear RNase P in Saccharomyces cerevisiae. A wide variety of noncoding RNAs were shown to accumulate, suggesting nuclear RNase P participates in the turnover of normally unstable nuclear RNAs. In some cases, the accumulated noncoding RNAs were shown to be antisense to transcripts that commensurately decreased in abundance. Pre-mRNAs containing introns also accumulated broadly, consistent with either compromised splicing or failure to efficiently turnover pre-mRNAs that do not enter the splicing pathway. Taken together with the high complexity of the nuclear RNase P holoenzyme and its relatively non-specific capacity to bind and cleave mixed sequence RNAs, these data suggest nuclear RNase P facilitates turnover of nuclear RNAs in addition to its role in pre-tRNA biogenesis.

2011-08-29 | E-MEXP-3140 | biostudies-arrayexpress

Transcription profiling by array of human biopsies from normal esophageal epithelium and in vitro cell lines

Project description:Comparison of expression profiles of in vitro cell lines with biopsies from human normal esophageal epithelium.

2010-09-01 | E-MEXP-2795 | biostudies-arrayexpress

Cellular responses to the oxidizing effects of bleach

Project description:E. coli MG1655 was grown in MOPS minimal glucose medium at 37 degrees C with aeration to an OD600 of 0.4 - 0.5, and HOCl was added to a final concentration of 400 ?M. 0.5 ml samples were collected in liquid nitrogen immediately before, 5 min after, and 10 min after HOCl addition, and total RNA was prepared using the RNeasy? Midi kit (Qiagen). cDNA synthesis, array hybridization to Affymetrix GeneChip E. coli genome 2.0 Arrays, and imaging were performed according to Affymetrix guidelines at the Affymetrix and Microarray Core facility at the University of Michigan, Ann Arbor.

2013-04-10 | E-MEXP-3639 | biostudies-arrayexpress

Differential expression pattern of GM rice expressing afp and conventional rice

Project description:Comparison of the transcriptome profiles of conventional and antifungal protein (AFP) producing GM rice

2011-05-17 | E-MEXP-2730 | biostudies-arrayexpress

“Intelligent versus Blind response”- Unveiling a Hypercellulolytic Fungus Strategy for Efficient Polymeric Carbon Deconstruction via Multiplexed Quantitative Proteomics

Project description:Fungi are ubiquitous and are often confronted with the need to secure utilisable carbon from their external growth milieu through the use of extracellular proteins to scavenge for carbon from a vast array of complex polymeric carbon sources. This attribute is conserved across evolution in fungi. To understand how filamentous fungi extracellular proteins are modulated in response to the presence polymeric carbons in the environment, we have typed the array of the main extracellular proteins involved and their dynamics using a known hypercellulolytic fungus – Penicillium funiculosum (NCIM 1228), through multiplexed quantitative proteomics

2018-04-12 | PXD006445 | Pride

Transcription profiling by array of Herminiimonas arsenicoxydans during arsenic stress

Project description:Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

2010-09-01 | E-MEXP-2809 | biostudies-arrayexpress

Transcription profiling of Herminiimonas arsenicoxydans reveals transcriptional controls affect arsenite oxidase activity

Project description:view of the global regulation of gene expression in Herminiimonas arsenicoxydans in response to As(III) stress, in particular those coding for arsenite oxidation.

2009-07-01 | E-MEXP-2199 | biostudies-arrayexpress

Transcription profiling of Escherichia coli over-expressing genes involved in signaling systems that detect and respond to alterations of the bacterial envelope

Project description:The Bae, Cpx, Psp, Rcs and ?E pathways constitute the Escherichia coli signaling systems that detect and respond to alterations of the bacterial envelope. Contributions of these systems to stress response have previously been examined individually; however, the possible interconnections between these pathways are unknown. Here we investigate the dynamics between the five stress response pathways by i) determining the specificities of each system with respect to signal inducing conditions, and ii) monitoring global transcriptional changes in response to transient over-expression of each of the effectors.

2009-05-31 | E-MEXP-2139 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data