Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chromatin immunoprecipitation of Lmd protein in Drosophila melanogaster during embryonic development

ABSTRACT: Genomewide mapping of Drosophila Lmd protein binding during embryonic development. Two consecutive timepoints (6-8 and 8-10 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Lmd protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to tiling arrays covering ~ 50% of the Drosophila melanogaster genome.

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Charles Girardot

PROVIDER: E-TABM-895 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Chromatin immunoprecipitation of Biniou protein in Drosophila during embryonic development

Project description:Genomewide mapping of D. melanogaster Biniou protein binding during embryonic development. Four consecutive timepoints (6-8, 8-10, 10-12, 12-14 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Biniou protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to tiling arrays covering ~ 50% of the Drosophila melanogaster genome.

2007-10-11 | E-TABM-249 | biostudies-arrayexpress

Transcription profiling of Drosophila melanogaster homozygous mutant embryos in a timecourse of embryogenesis

Project description:Expression profiling of Drosophila Lmd (lame-duck) homozygous mutant embryos in a timecourse of embryogenesis. Five one-hour timepoints were assayed (5-11 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated embryo sorting at the same time as stage-matched wildtype controls. Four independent collections were performed at each timepoint. Total RNA was extracted and amplified. Mutant and respective wildtype samples were hybridized together on cDNA arrays.

2010-06-01 | E-TABM-894 | biostudies-arrayexpress

Chromatin immunoprecipitation of Bagpipe protein in Drosophila during embryonic development

Project description:Genomewide mapping of D. melanogaster Bagpipe protein binding during embryonic development. One time point (6-8 hrs after egg-laying) were assayed in four independent repeats. Two different antibodies were used to precipitate the Bagpipe protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to tiling arrays covering ~ 50% of the Drosophila melanogaster genome.

2007-10-11 | E-TABM-247 | biostudies-arrayexpress

Chromatin immunoprecipitation to identify Tinman protein binding during embryonic delelopment in D. melanogaster

Project description:Genomewide mapping of Drosophila Tinman protein binding during embryonic development. Three consecutive timepoints (2-4, 4-6, 6-8 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Tinman protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to tiling arrays covering ~ 50% of the Drosophila melanogaster genome.

2009-04-16 | E-TABM-558 | biostudies-arrayexpress

Chromatin immunoprecipitation of Drosophila to identify Biniou protein binding during embryonic development

Project description:Genomewide mapping of D. melanogaster Biniou protein binding during embryonic development. Three consecutive timepoints (6-8, 8-10, 10-12 hrs after egg-laying) were assayed in two independent repeats each. Two different antibodies were used to precipitate the Biniou protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to high density Affymetrix GeneChip Drosophila Tiling 1.0R array.

2009-11-09 | E-TABM-652 | biostudies-arrayexpress

Chromatin immunoprecipitation of Drosophila to identify Tinman protein binding during embryonic development

Project description:Genomewide mapping of D. melanogaster Tinman protein binding during embryonic development. Three consecutive timepoints (2-4, 4-6, 6-8 hrs after egg-laying) were assayed in two independent repeats each. Two different antibodies were used to precipitate the Tinman protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to high density Affymetrix GeneChip Drosophila Tiling 1.0R array.

2009-11-09 | E-TABM-650 | biostudies-arrayexpress

Chromatin immunoprecipitation of Twist protein during embryonic development in Drosophila

Project description:Genomewide mapping of Drosophila Twist protein binding during embryonic development. Two consecutive timepoints (2-4 and 4-6 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Twist protein. Additionally, preimmune-serum was used as a control. The enriched DNA was hybridized to custom designed tiling arrays optimized for assaying all E-box motifs outside repetitive or coding regions of the Drosophila melanogaster genome (average gap size = 290 bps).

2007-03-28 | E-TABM-159 | biostudies-arrayexpress

Chromatin immunoprecipitation of Mef2 protein in Drosophila during embryonic development

Project description:Genomewide mapping of Drosophila Mef2 protein binding during embryonic development. Five consecutive timepoints (2-4, 4-6, 6-8, 8-10, 10-12 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Mef2 protein. Additionally the respective preimmune-serum was used as a control for every precipitation. The enriched DNA was hybridized to tiling arrays covering ~ 50% of the Drosophila melanogaster genome.

2006-06-06 | E-TABM-56 | biostudies-arrayexpress

Dm Lmd 6-8hrs Affymetrix ChIP

Project description:Genomewide mapping of D. melanogaster Lame duck protein binding at 6-8hrs after egg laying. Two different rabbit antibodies were used to precipitate the Lmd protein isoform in biological replicates. Additionally a rabbit preimmune-serum was used as a control. The enriched DNA was hybridized to high density Affymetrix GeneChip Drosophila Tiling 1.0R array.

2014-03-01 | E-MTAB-1283 | biostudies-arrayexpress

Transcription profiling of Drosophila Mef2 homozygous mutant embryos in a timecourse of embryogenesis

Project description:Expression profiling of Drosophila Mef2 homozygous mutant embryos in a timecourse of embryogenesis. Twelve one-hour timepoints were assayed (5-16 hrs, 18-19 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated embryo sorting at the same time as stage-matched wildtype controls. Four independent collections were performed at each timepoint. Total RNA was extracted and amplified. Mutant and respective wildtype samples were hybridized together on cDNA arrays.

2006-06-06 | E-TABM-57 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data