The Ensembl analysis pipeline.
Ontology highlight
ABSTRACT:
SUBMITTER: Potter SC
PROVIDER: S-EPMC479123 | biostudies-literature | 2004 May
REPOSITORIES: biostudies-literature
Publications
The Ensembl analysis pipeline.
Potter Simon C SC Clarke Laura L Curwen Val V Keenan Stephen S Mongin Emmanuel E Searle Stephen M J SM Stabenau Arne A Storey Roy R Clamp Michele M
Genome research 20040501 5
The Ensembl pipeline is an extension to the Ensembl system which allows automated annotation of genomic sequence. The software comprises two parts. First, there is a set of Perl modules ("Runnables" and "RunnableDBs") which are 'wrappers' for a variety of commonly used analysis tools. These retrieve sequence data from a relational database, run the analysis, and write the results back to the database. They inherit from a common interface, which simplifies the writing of new wrapper modules. On t ...[more]
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