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Crystal structure of di-μ-chlorido-bis-[di-chlorido(l-histidinium-κO)cadmium(II)].

ABSTRACT: In the title compound, [Cd₂(C₆H₉N₃O₂)₂Cl₆], the coordination polyhedra around the Cd^II cations are distorted trigonal bipyramids. Two of the chloride ions (one axial and one equatorial) are bridging to the other metal atom, leading to a Cd⋯Cd separation of 3.9162 (4) Å. The O atom of the l-histidinium cation lies in an axial site. In the crystal, numerous N-H⋯Cl, N-H⋯O, C-H⋯O and C-H⋯Cl hydrogen bonds link the mol-ecules into a three-dimensional network. Theoretical calculations and spectroscopic data are available as supporting information.

SUBMITTER: Mohamedi N

PROVIDER: S-EPMC6658965 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Crystal structure, Hirshfeld surface analysis and physicochemical characterization of bis-[4-(di-methyl-amino)-pyridinium] di-μ-chlorido-bis[di-chlorido-mercurate(II)].

Project description:The title mol-ecular salt, (C7H11N2)2[Hg2Cl6], crystallizes with two 4-(di-methyl-amino)-pyridinium cations (A and B) and two half hexa-chlorido-dimercurate(II) anions in the asymmetric unit. The organic cations exhibit essentially the same features with an almost planar pyridyl ring (r.m.s. deviations of 0.0028 and 0.0109 Å), which forms an inclined dihedral angle with the dimethyamino group [3.06 (1) and 1.61 (1)°, respectively]. The di-methyl-amino groups in the two cations are planar, and the C-N bond lengths are shorter than that in 4-(di-methyl-amino)-pyridine. In the crystal, mixed cation-anion layers lying parallel to the (010) plane are formed through N-H⋯Cl hydrogen bonds and adjacent layers are linked by C-H⋯Cl hydrogen bonds, forming a three-dimensional network. The analyses of the calculated Hirshfeld surfaces confirm the relevance of the above inter-molecular inter-actions, but also serve to further differentiate the weaker inter-molecular inter-actions formed by the organic cations and inorganic anions, such as π-π and Cl⋯Cl inter-actions. The powder XRD data confirms the phase purity of the crystalline sample. Furthermore, the vibrational absorption bands were identified by IR spectroscopy and the optical properties were studied by using optical UV-visible absorption spectroscopy.

| S-EPMC6829733 | biostudies-literature

Crystal structure of di-μ-isobutyrato-κ(4) O:O'-bis-[cis-di-chlorido-(dimethyl sulfoxide-κS)rhenium(III)].

Project description:The title compound, [Re2(C3H7COO)2Cl4{(CH3)2SO}2], comprises binuclear complex mol-ecules [Re-Re = 2.24502 (13) Å] involving cis-oriented double carboxyl-ate bridges, four equatorial chloride ions and two weakly bonded O atoms from dimethyl sulfoxide ligands in the axial positions at the Re(III) atoms. In the crystal, mol-ecules are linked into corrugated layers parallel to (101) by very weak C-H⋯Cl and C-H⋯O hydrogen-bonding inter-actions. C-H⋯Cl hydrogen bonding provides the links between layers to consolidate a three-dimensional framework.

| S-EPMC4647422 | biostudies-literature

Crystal structure of hexa-kis-(N,N-di-methyl-form-amide-κO)iron(III) μ-chlorido-bis-(tri-chlorido-cadmium).

Project description:The title compound, [Fe(C3H7NO)6][Cd2Cl7], crystallizes in the trigonal space group R and is assembled from discrete [Fe(DMF)6]3+ cations (DMF = N,N-di-methyl-formamide) and [Cd2Cl7]3- anions. In the cation, the iron(III) atom, located on a special position of site symmetry, is coordinated by six oxygen atoms from DMF ligands with all Fe-O distances being equal [2.0072 (16) Å]. A slight distortion of the octa-hedral environment of the metal comes from the cis O-Fe-O angles deviating from the ideal value of 90° [86.85 (7) and 93.16 (7)°] whilst all the trans angles are strictly 180°. The central Cl atom of the [Cd2Cl7]3- anion is also located on a special position of site symmetry and bridges two corner sharing, tetra-hedrally coordinated CdII atoms. The two Cd atoms and the central Cl atom are colinear. The two sets of terminal chloride ligands on either side of the dumbbell-like anion are rotated relative to each other by 30°. In the crystal, the cations and anions, stacked one above the other along the c-axis direction, are held in place principally by electrostatic inter-actions. There are also C-H⋯Cl and C-H⋯O inter-actions, but these are rather weak. Of the six crystal structures reported to date for ionic salts of [Fe(DMF)6] n+ cations (n = 2, 3), five contain FeII ions. The title compound is the second example of a stable compound containing the [Fe(DMF)6]3+ cation. The existence of both [Fe(DMF)6]2+ and [Fe(DMF)6]3+ cations shows that the DMF ligand coordination sphere can accommodate changes in the charge and spin states of the metal centre.

| S-EPMC8491531 | biostudies-literature

Crystal structure of di-μ-chlorido-bis-{chlorido-[(-)-5,6-pinenebi-pyridine]-cobalt(II)} aqua-dichlorido[(-)-5,6-pinenebi-pyridine]cobalt(II).

Project description:The crystal structure of [Co2Cl4(C17H18N2)2][CoCl2(C17H18N2)(H2O)] or [Co(L)Cl(μ-Cl)]2[Co(L)(Cl)2(OH2)], where L is the enanti-opure bidentate ligand (-)-5,6-pinenebi-pyridine (C17H18N2), has been determined. Crystals suitable for X-ray structure analysis were obtained by slow evaporation of an ethano-lic solution containing equimolar amounts of L and CoCl2·6H2O. The CoII cations all have a coordination number of five, and in each case the coordination polyhedron is a trigonal bipyramid. The Co-N bonds lengths range from 2.037 (7) to 2.195 (7) Å, and Co-Cl bonds lengths range from 2.284 (2) to 2.509 (2) Å. The asymmetric unit contains two discrete complexes, one dinuclear and the other mononuclear. Between the two mol-ecules, two types of inter-molecular inter-actions have been evidenced: π-π stackings involving the bi-pyridine units, and O-H⋯Cl hydrogen bonds between the hydrogen atoms of the aqua ligand coordinating to the mononuclear complex and the non-bridging chlorido ligand coordinating to the dinuclear mol-ecule. These inter-actions lead to a two-dimensional supra-molecular arrangement parallel to the ab plane.

| S-EPMC9069521 | biostudies-literature

Crystal structure of di-μ-chlorido-bis-[chlorido-bis-(1,2-dimethyl-5-nitro-1H-imidazole-κN3)copper(II)] acetonitrile disolvate.

Project description:1,2-Dimethyl-5-nitro-imidazole (dimetridazole, dimet) is a compound that belongs to a class of nitro-imidazole drugs that are effective at inhibiting the activity of certain parasites and bacteria. However, there are few reports that describe structures of compounds that feature metals complexed by dimet. Therefore, we report here that dimet reacts with CuCl2·H2O to yield a chloride-bridged copper(II) dimer, [Cu2Cl4(C5H7N3O2)4] or [Cu(μ-Cl)Cl(dimet)2]2. In this mol-ecule, the CuII ions are coordinated in an approximately trigonal-bipyramidal manner, and the mol-ecule lies across an inversion center. The dihedral angle between the imidazole rings in the asymmetric unit is 4.28 (7)°. Compared to metronidazole, dimetridazole lacks the hy-droxy-ethyl group, and thus cannot form inter-molecular O⋯H hydrogen-bonding inter-actions. Instead, [Cu(μ-Cl)Cl(dimet)2]2 exhibits weak inter-molecular inter-actions between the hydrogen atoms of C-H groups and (i) oxygen in the nitro groups, and (ii) the terminal and bridging chloride ligands. The unit cell contains four disordered aceto-nitrile mol-ecules. These were modeled as providing a diffuse contribution to the overall scattering by SQUEEZE [Spek (2015 ▸). Acta Cryst. C71, 9-18], which identified two voids, each with a volume of 163 Å3 and a count of 46 electrons, indicative of a total of four aceto-nitrile mol-ecules. These aceto-nitrile mol-ecules are included in the chemical formula to give the expected calculated density and F(000).

| S-EPMC5095849 | biostudies-literature

Crystal structure of bis-[μ-bis-(di-phenyl-phosphan-yl)methane-κ(2) P:P']-μ-chlorido-chlorido-1κCl-(1-phenyl-thio-urea-2κS)disilver aceto-nitrile hemisolvate.

Project description:In the dinuclear title complex, [Ag2Cl2(C7H8N2S)(C25H22P2)2]·0.5CH3CN, each Ag(I) ion displays a distorted tetra-hedral coordination geometry with two P atoms from two bis-(di-phenyl-phosphan-yl)methane (dppm) ligands, one bridging chloride ion, one terminal chloride ion and one terminal S atom from the N,N'-phenyl-thio-urea (ptu) ligand. The dppm ligands and the bridging chloride ion force the two Ag atoms into close proximity, with a short Ag⋯Ag separation of 3.2064 (2) Å. In the crystal, complex mol-ecules are linked by N-H⋯Cl hydrogen bonds forming a dimer. The dimers are linked via weak C- H⋯Cl hydrogen bonds forming a two-dimensional supra-molecular architecture in the yz plane. In addition, an intra-molecular N-H⋯Cl hydrogen bond is observed.

| S-EPMC4459320 | biostudies-literature

Di-μ-chlorido-bis-(chlorido-{8-[2-(di-methyl-amino)-ethyl-amino]-quinoline}-cadmium) ethanol monosolvate.

Project description:The title solvated bimetallic complex, [Cd2Cl4(C13H17N3)2]·C2H5OH, comprises two Cd2+ metal ions linked by a pair of μ2 Cl- ions. The coordination sphere around each Cd2+ ion is completed by three N atoms of a tridentate 8-[2-(di-methyl-amino)-ethyl-amino]quinoline ligand and another chloride ion to form a distorted fac-CdN3Cl3 octa-hedron. The ethanol mol-ecule is both an acceptor of an N-H⋯O and a donor of an O-H⋯Cl hydrogen bonds to its adjacent complex unit. In the crystal, weak aromatic π-π stacking is observed.

| S-EPMC9462312 | biostudies-literature

Crystal structure of meso-di-μ-chlorido-bis-[bis-(2,2'-bi-pyridine)-cadmium] bis-(1,1,3,3-tetra-cyano-2-ethoxy-propenide) 0.81-hydrate.

Project description:The hydrated title salt, [Cd2Cl2(C10H8N2)4](C9H5N4O)2·0.81H2O, was obtained from the hydro-thermal reaction between 2,2'-bi-pyridine, cadmium(II) chloride and potassium 1,1,3,3-tetra-cyano-2-eth-oxy-propenide. The binuclear cation lies across a centre of inversion in the space group P21/c, with the other components in general positions. The cation has approximate, but non-crystallographic 2/m symmetry and each of the CdII atoms is a stereogenic centre, one having the Δ configuration and the other the Λ configuration. In the anion, one of the C(CN)2 units is disordered over two sets of atomic sites having occupancies 0.75 (2) and 0.25 (2). The cations are linked by two independent C-H⋯Cl hydrogen bonds to form a sheet of R22(14) and R42(24) rings.

| S-EPMC5209770 | biostudies-literature

Di-μ-chlorido-bis-[chlorido(1,10-phenanthroline-κN,N')zinc(II)].

Project description:In the crystal structure of the title complex, [Zn(2)Cl(4)(C(12)H(8)N(2))(2)], each of the two five-coordinated Zn(II) atoms displays a strongly distorted trigonal-bipyramidal geometry defined by two N atoms from the chelate ligand and by one terminal and two bridging chloride anions. The crystal structure is stabilized by C-H⋯Cl inter-actions. There is inter-molecular π-π stacking between adjacent phenanthroline ligands, with a centroid-centroid distance of 3.151 (3) Å.

| S-EPMC2977612 | biostudies-literature

Crystal structure of di-chlorido-bis-(methyl isonicotinate-κN)copper(II).

Project description:In the title compound, [CuCl2(C7H7NO2)2], the square-planar-coordinated Cu(II) ion lies on a centre of symmetry and is bonded to two monodentate methyl-isonicotinate ligands through their N atoms and by two chloride ligands. The mol-ecules pack in a herringbone pattern. Perpendicular to [100] there are weak inter-molecular C-H⋯Cl and C-H⋯O contacts. Along [100] there are infinite chains of edge-sharing octa-hedra linked through the chlorido ligands.

| S-EPMC4420097 | biostudies-literature

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