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Ensembl 2021.


ABSTRACT: The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomics by inferring the evolutionary history of genes and genomes. Our integrated genomic data are made available in a variety of ways, including genome browsers, search interfaces, specialist tools such as the Ensembl Variant Effect Predictor, download files and programmatic interfaces. Here, we present recent Ensembl developments including two new website portals. Ensembl Rapid Release (http://rapid.ensembl.org) is designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects. Our SARS-CoV-2 genome browser (https://covid-19.ensembl.org) integrates our own annotation with publicly available genomic data from numerous sources to facilitate the use of genomics in the international scientific response to the COVID-19 pandemic. We also report on other updates to our annotation resources, tools and services. All Ensembl data and software are freely available without restriction.

SUBMITTER: Howe KL 

PROVIDER: S-EPMC7778975 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

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Ensembl 2021.

Howe Kevin L KL   Achuthan Premanand P   Allen James J   Allen Jamie J   Alvarez-Jarreta Jorge J   Amode M Ridwan MR   Armean Irina M IM   Azov Andrey G AG   Bennett Ruth R   Bhai Jyothish J   Billis Konstantinos K   Boddu Sanjay S   Charkhchi Mehrnaz M   Cummins Carla C   Da Rin Fioretto Luca L   Davidson Claire C   Dodiya Kamalkumar K   El Houdaigui Bilal B   Fatima Reham R   Gall Astrid A   Garcia Giron Carlos C   Grego Tiago T   Guijarro-Clarke Cristina C   Haggerty Leanne L   Hemrom Anmol A   Hourlier Thibaut T   Izuogu Osagie G OG   Juettemann Thomas T   Kaikala Vinay V   Kay Mike M   Lavidas Ilias I   Le Tuan T   Lemos Diana D   Gonzalez Martinez Jose J   Marugán José Carlos JC   Maurel Thomas T   McMahon Aoife C AC   Mohanan Shamika S   Moore Benjamin B   Muffato Matthieu M   Oheh Denye N DN   Paraschas Dimitrios D   Parker Anne A   Parton Andrew A   Prosovetskaia Irina I   Sakthivel Manoj P MP   Salam Ahamed I Abdul AIA   Schmitt Bianca M BM   Schuilenburg Helen H   Sheppard Dan D   Steed Emily E   Szpak Michal M   Szuba Marek M   Taylor Kieron K   Thormann Anja A   Threadgold Glen G   Walts Brandon B   Winterbottom Andrea A   Chakiachvili Marc M   Chaubal Ameya A   De Silva Nishadi N   Flint Bethany B   Frankish Adam A   Hunt Sarah E SE   IIsley Garth R GR   Langridge Nick N   Loveland Jane E JE   Martin Fergal J FJ   Mudge Jonathan M JM   Morales Joanella J   Perry Emily E   Ruffier Magali M   Tate John J   Thybert David D   Trevanion Stephen J SJ   Cunningham Fiona F   Yates Andrew D AD   Zerbino Daniel R DR   Flicek Paul P  

Nucleic acids research 20210101 D1


The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomics by inferring the evolutionary history of genes and genomes. Our integrated genomic data are made available in a variety of ways, including genome browsers, search interfaces, specialist tools such as the Ensembl Variant Effect Predictor, download f  ...[more]

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